Dehalococcoides mccartyi VS: DhcVS_380
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Entry
DhcVS_380 CDS
T01136
Name
(GenBank) metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dev
Dehalococcoides mccartyi VS
Pathway
dev03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dev00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DhcVS_380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dev03019
]
DhcVS_380
Messenger RNA biogenesis [BR:
dev03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DhcVS_380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
ACZ61536
UniProt:
D2BGT6
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Position
368493..370148
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AA seq
551 aa
AA seq
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MAKPKLKIVPLGGLGEIGKNMMSVEYGEDIILIDCGLMFPEEEMLGIDLVIPDISYVLEN
REKVRGIVITHGHEDHIGALPYILPQINVPIYCTKLTQGLISVKLKEAKLLHQTKINVIP
SDGTFKLGKLKVDFYPVCHSLPDSVGLVIQTPIGAVVHSGDFKLDYTPVDGKPTNLSRLA
MLGSRGVLLLMSDSTHVELPGYTPSETVVGENIDRIIGAATGRVLVTTFASLISRQQQVI
DAAAKYGRKLFFAGRSMTEIHKMAAELGYLKVPEGLVCNIDQLQRVPPEKVVLMTTGSQG
EPTSALVRIANRDFRHVHIMKGDTVIISASPIPGNESLVSRTIDSLFRQGAKVFYDRIAK
VHVHGHASQEELKLVLNLVKPKYFVPVHGEYRHLTMHAELARTMGVAPENTFIMEDGDIL
ELNTKSGRITGKVPSGNVYVDGLSVGDVGGVVLRNRRMLSQDGIVVAIVAINKQTGMLVG
RPDIVSRGFVDPDESKAMLDASRDLIIKLLDHDGKDIPEGAMYNDVKETLNKFYYEQTKR
RPMVIPVMVKV
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaacctaaactgaagattgtacctctgggtggcctgggtgagataggcaagaat
atgatgtctgtagaatatggggaggatattatcctcatagactgcgggctgatgttcccg
gaagaagaaatgctgggtatagatttggttatacctgacatttcatacgtgctggaaaac
cgcgaaaaagtgcggggcattgtaattacccatggtcatgaagatcatataggggcatta
ccttatatactcccccagataaatgtgcctatttattgcaccaaattgacccaggggctt
atttcggtaaagctgaaagaggccaagctgctgcaccagaccaagataaatgttatcccg
tctgacggcactttcaagctgggtaaactcaaagtggacttttatccggtctgccacagt
ctgccggactctgtggggctggttattcagacgcctatcggggcggtagtccacagcggt
gatttcaaactggactatacgccggtagatggcaagcccaccaatctgtcacgtctggct
atgctgggctcgcgtggagtactgcttttgatgtcagactccacccatgtggagctgccg
ggttataccccctcggaaactgtggtgggcgaaaatattgaccgtattatcggggcggct
acggggcgggtactggtgaccacctttgcttcgcttatttcccgccagcagcaggttatt
gatgccgctgccaaatacgggcggaagctcttttttgccggccgcagtatgactgagatt
cataaaatggcggctgaactgggttacctcaaagtccccgaaggtctggtttgcaatata
gaccagcttcagcgtgtgcctccggaaaaagtggttttgatgactaccggttctcagggt
gaacctacttccgcactggtgcggatagccaaccgtgatttccgccatgtccatataatg
aaaggtgataccgtaattatttcggcctcgcccatacccggcaatgagtcactggtgagc
cgcactatagacagcctgttccgccagggggctaaggtattttatgaccgcatagccaag
gtgcatgttcacgggcatgccagccaggaagaactgaagttggtgcttaatctggtcaag
cccaagtattttgtgcctgtacacggcgaataccgccatctgaccatgcatgcggagctg
gcccggactatgggtgttgccccggaaaatacttttattatggaagacggggatatactg
gagcttaataccaagtccggccgtattaccggcaaagttccctccggcaatgtttatgta
gacggtcttagcgtgggtgatgtgggtggggtggtactccgcaaccgccgtatgctttcg
caggacggtattgtggtggcgattgtagctatcaacaagcaaaccggcatgttggtgggt
aggccggatattgtttccagaggttttgttgaccctgatgaatctaaagccatgctggat
gccagccgtgaccttataatcaagctgcttgaccacgacggtaaagacattcccgaaggg
gctatgtataatgacgtcaaagaaacactgaacaagttttactatgagcagactaaacgg
cgtcctatggttattccggttatggtaaaagtgtag
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