Dehalococcoides mccartyi VS: DhcVS_491
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Entry
DhcVS_491 CDS
T01136
Symbol
rpoD
Name
(GenBank) DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
KO
K03086
RNA polymerase primary sigma factor
Organism
dev
Dehalococcoides mccartyi VS
Brite
KEGG Orthology (KO) [BR:
dev00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DhcVS_491 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dev03021
]
DhcVS_491 (rpoD)
Transcription machinery [BR:
dev03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DhcVS_491 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
CENP-B_N
Motif
Other DBs
NCBI-ProteinID:
ACZ61645
UniProt:
D2BH45
LinkDB
All DBs
Position
complement(460468..462030)
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AA seq
520 aa
AA seq
DB search
MPAEKDKKEFSPDDIDDDKDVEQGLADIHDEQDAEAESDKLVEPDLKDIADTDIPAELTE
EELAAEADMMPDTDEEIGPLNIDLEIPLEQVDTQGIVDDPVRMYLHEIGRVPLLSAEDEK
TLAKKMEEGKRIREIRQECLEKRGRYPSAAESFLCMLRELAQATEVLFQLGQELKVDTSA
SLKTIIHNPKLRAAIDHEIDQQLTKNISDNTGKSMAEIEQAFINLAINSSLLPKVVLDAI
PEKMTIPEISDHTNDPAFISHLERHEASLKYYLDNLEIDAKRAERHLIQANLRLVVSVAK
KHIGRGMPLLDLIQEGNIGLIRAVEKFDFHRGFKFSTYATWWIRQAITRAIADQARTIRI
PVHMVETINKLLSISRQLSQKLGREPTPDEIALEMDLPPEKVREIAKVSQLPVSLESPIG
EEEDSHLGDFIEDQNALAPPDAASRQLLKEQIDTVLGSLTPRERRVLQLRFGLEDGRSRT
LEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYLE
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagaaagataagaaggaatttagccctgacgatatcgatgatgataaagat
gtggaacaggggctggctgatatccatgacgaacaggatgccgaagcagaaagtgacaaa
ctggtagagcctgacctcaaagatatagccgataccgacataccggccgaactaaccgaa
gaagaactggcggccgaagcggatatgatgccggacacagacgaagaaatcggcccgctt
aatattgaccttgaaataccccttgagcaggttgatacccagggtatcgtagatgacccg
gtacgcatgtatctgcatgaaatcggcagggtacctttgctttccgccgaagacgaaaaa
accctggctaagaaaatggaagaaggcaaacgcatacgtgaaatccgtcaggagtgcctt
gaaaaacgcggacgctacccctcggctgcggaatctttcctgtgcatgctgagagagctt
gcccaagctaccgaggtgcttttccaactggggcaggaactaaaggtggatacttctgcc
agtctgaaaactattatccacaaccccaagctgagggcggctattgaccatgagattgac
cagcagcttaccaaaaatatctccgataataccggcaagagcatggcggagattgagcag
gcatttatcaatctggctataaacagctcccttctgcccaaggttgtgctggatgccata
cctgaaaaaatgaccataccggaaatatcagaccataccaacgaccctgcctttataagt
cacttggaacggcatgaggccagcctgaaatattatctggataaccttgagatagatgcc
aaacgagctgaacgtcaccttattcaggctaaccttcgccttgttgtcagcgtagcaaaa
aaacacatcggcagaggcatgcccctgcttgacctaatacaggaaggcaatatcggcctt
atacgggcagtggaaaaatttgatttccaccgcggcttcaagttttccacttacgccaca
tggtggatacgtcaggcaattacccgggctattgcagaccaggccaggactattcgcata
cctgtccatatggtggaaaccatcaacaagctgctgtccataagccggcagctgtcacag
aagctggggcgtgaacctaccccagatgagatagcccttgaaatggatttgccgcctgaa
aaggtacgtgaaattgccaaggtgtcccagctgccggtttcgctggaatcccctataggc
gaagaggaagatagtcatctgggagactttattgaagaccagaacgctcttgcacctccg
gatgctgcttcgcgccagttgctcaaagagcagatagatacagtgcttggcagcctgacc
ccgcgtgaacgccgggtacttcagctccgctttggtctggaagacggccgaagccgtaca
ctggaagaagtgggcaaagaatttaatgtaacacgtgaacgtatccgccagatagaagcc
aaggctctgcggaaactccgccaccccagccgcagccgcaaactgaaagattacctggaa
taa
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