Dehalococcoides mccartyi VS: DhcVS_544
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Entry
DhcVS_544 CDS
T01136
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dev
Dehalococcoides mccartyi VS
Pathway
dev03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dev00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DhcVS_544 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dev03021
]
DhcVS_544 (rpoC)
03400 DNA repair and recombination proteins [BR:
dev03400
]
DhcVS_544 (rpoC)
Enzymes [BR:
dev01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DhcVS_544 (rpoC)
Transcription machinery [BR:
dev03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DhcVS_544 (rpoC)
DNA repair and recombination proteins [BR:
dev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DhcVS_544 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
MazG_C
Motif
Other DBs
NCBI-ProteinID:
ACZ61696
UniProt:
D2BH96
LinkDB
All DBs
Position
513206..517093
Genome browser
AA seq
1295 aa
AA seq
DB search
MNEVNDFDAIRISLASPDQIRSWSYGEVTKPETINYRTLKPERDGLFCERIFGPIKDFEC
ACGKYKRIRYKGIICDKCGVEIARAKVRRERMGHIELACPVGHIWFTRGIPSRVGLLLNL
STRSLERIIYYSHFIITAVNDEAREKAIKDLEVISSQRVADKGSEVDTKVAQMEAEDATV
EAINQVRRDFSAEREQMEEDIQLLIDQLKDLQIGNLLTENQYYELKQRFSNVFEASMGAE
ALLKLLSYIDMDKERSKLIQETRSTSGQRRKKAGKQLQLVEAFRRSSNKPEWMIMTVLPV
LPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLQHLMEIGAPEIIIRNEKRMLQEAVD
SLIDNGRRGKSVAVNGDHKAKSLSDLLRGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKLS
QCGLPRRMALELFKPFVMHRLVRDGLAPNIKSARRLVERARPEVYDILEEVVKERPVMLN
RAPTLHRLSIQAFEPVLIDGSALRLHPLVCSAFNADFDGDQMAVHVPLSKAAVKEARETM
LSIHNMMLPSSGEPVVSPSLDMVFGCYYLTTTRPGAKGEGKVFSDFEEAKHYYEMGIIDL
RAIIKVRDGKGNMLETTTGRIIFNDVLPKAVEFQNMDIPKSAIKKIIGRCYKILSSQDMA
IMLDKIKQLGFKYATSSGISIAMSDISVPREKAKLVAAADERTAISEGQFARGLITEDER
YNSIIETWMETTDRITDAIQAGFDKQGSVYMMANSGAKGNISQIRQMAGLRGLMTNPSGR
IIDFPIKSSLREGLTALEYFISTHGARKGLADTALRTSGSGYLTRRLIDVTQDVIILQED
CGTSNGTWIVEPKEKGMLPPLVDRVLGRWAAHNVVHPQTGEIIVENNEEIDEAKAKAIGE
AGITEVFVRSPLTCEATHGMCRRCYGRDLGRVRLVDMNTAVGIIAAQSIGEPGTQLTLRT
FHTGGVVGVDITTGLPRVEELFEARPPKVQSIISEIDGAVEVIENENGRHIRIASDEVYQ
DEYELPSGWKTQVQSGQWVDSGMVLASPEMEGKSKAVVQSDQNVVARVAGEVSVDGNLIT
IKYSESEEREYAIPAAMQIKVKTGDSVRAGQQLTDGSINPQDILSILGRDAVQKYLVEEV
QKVYYSQGVHINDKHIEVIARQMLIKVRIDSSGDTDLVPGELVDKFRYEDINAKVLAEGG
EPATAHTVLMGITRASLSTESWLAAASFQETTRVLTDAAIYGKVDKLSGLKENVIIGKLI
PAQCKSCKEATVERAERIAAAASAPAVSSLPENCL
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagttaatgattttgatgctatacggatttcgctggcttcccctgaccagata
cgaagctggtcttatggtgaggttaccaaacctgaaaccataaactatcgtacgttaaag
ccggagcgggacggtcttttctgtgagcgcatttttggccctattaaggactttgagtgt
gcctgcggcaaatacaaacgtatccgctacaagggcattatatgtgataagtgcggagtg
gaaattgcccgtgccaaggtacggcgtgaacggatggggcatattgaactggcctgtccg
gtaggccatatctggttcacccgcgggattcccagccgcgtaggcctgctgcttaacctt
tctacccgcagccttgaaaggattatttattattcccatttcattatcactgcggtaaat
gatgaagcccgtgaaaaggctattaaagaccttgaggttatttcatcccagcgggtggct
gataagggcagcgaggtagataccaaggttgcccagatggaagctgaagatgccactgtt
gaagctattaatcaggttcgccgtgatttttcagctgaacgtgagcaaatggaagaagat
atccagctgcttatagatcagctgaaagacctgcaaataggtaatctgctgaccgaaaac
cagtattacgaattgaaacagcgtttcagcaatgtttttgaagcatctatgggtgctgag
gccttgttaaaactgctttcttacattgatatggacaaggaacggagcaaactcattcaa
gaaacccgttccacctcaggccagcgccgcaaaaaggccggtaaacagcttcagctggta
gaggctttccgccgttccagcaacaagcctgagtggatgattatgacggttctgccggta
ctgccgcctgacctgcgtcctatggttcagcttgatggcggccgttttgccaccagtgac
ttaaatgacctttaccgcagggttattaaccgcaataaccgtctccagcacttgatggaa
atcggggcgccggagattattatccgcaacgaaaagcgtatgcttcaggaagcggtggat
tcactgattgataacgggcgccgcggcaagagcgtggctgtaaatggtgaccacaaagcc
aagtcgctttctgacttgcttcgcggtaaacagggacgcttccgccagaatctgctgggt
aaacgtgttgactactcaggccgttcggttattgtggtaggcccttcactcaaactttca
cagtgcggtctgccccgccgtatggcacttgagctctttaaaccctttgtcatgcaccgt
ttggtacgtgacgggttagctcctaatatcaagagtgcccgccgtttggtagagcgtgcc
cgccctgaggtttacgatattttggaagaggtggtcaaagagaggccggttatgcttaat
cgtgctcctactctgcatcgccttagtatccaggcctttgagccggtactcattgacggc
agtgccctcaggcttcacccgttggtttgttcggcatttaacgctgactttgatggtgac
cagatggctgtccacgtgcctctttccaaggcggccgtgaaagaagcccgtgaaaccatg
ctgtccattcataatatgatgcttccctccagcggtgagccggtggtctcccccagtctt
gatatggtctttggttgttattacctgacaaccacccgtccgggcgcaaaaggtgagggt
aaagtcttcagcgactttgaagaagccaaacattattacgaaatgggtattattgacctc
cgtgccattatcaaggtacgtgacggcaaagggaatatgctggaaaccactaccgggcgg
attatattcaatgatgtcctgcccaaggctgtagagtttcagaatatggacatacccaaa
tccgccattaaaaagataatcggacgttgttacaagatactttccagccaggatatggct
atcatgctggacaagattaaacagcttggtttcaaatacgccaccagctcaggcatttct
attgccatgagtgatatttcagtaccgcgtgaaaaagctaaactggtagccgctgctgat
gagcggactgcaatttccgaagggcagtttgcccgcggtcttatcaccgaagatgaacgc
tacaacagcatcattgaaacgtggatggaaacgactgaccgcattacggacgccattcag
gctggctttgacaaacagggttctgtttacatgatggctaactctggtgctaaaggtaac
atttcccagatacgccagatggctggtctgcgcggccttatgactaacccttccggccgt
attatcgacttccccatcaagtcttccctgcgtgagggtttgactgccctggagtacttt
atatctacccatggtgcccgcaaaggtctggctgataccgctttgcgtacgtccggttca
ggttatctgactcgccgtcttatagacgtaacacaggatgttatcattcttcaggaagac
tgcggcacttcaaatggtacctggatagtagagcccaaagaaaagggtatgctgccaccg
ctggttgaccgtgtacttggccgctgggctgctcataatgtggttcacccccaaaccggc
gaaattattgtggaaaacaatgaagagattgatgaagctaaagctaaggctatcggcgag
gctggtattaccgaggtctttgtgcgttctcctcttacctgcgaagctactcacggcatg
tgccgccgctgttacgggcgtgaccttggccgtgtccgtctggtagacatgaataccgcc
gtaggcattattgccgcccagagtatcggtgaacccggtacccagctgacactccgcacc
ttccacaccggcggtgtggtaggcgtagatatcactaccggtcttcccagagttgaagaa
ctctttgaagcccgcccgcccaaggttcagtctataatatctgagatagacggtgcggta
gaagttattgaaaatgaaaatggccgccatatccgcatagcctcagatgaggtctatcag
gatgaatacgaattaccttccggctggaagactcaggttcaaagcggtcagtgggtggat
tccggtatggtactggcttcgcctgaaatggaaggcaagtccaaagctgttgttcagagc
gaccagaatgtggttgccagagtggccggtgaagtttcagtggatggcaatctgattacc
atcaagtacagcgaaagtgaagaacgcgaatacgctatacctgccgctatgcagataaag
gttaaaaccggggatagtgtccgtgccggtcagcagctgactgacggctctataaacccg
caggatattctatccattttgggcagggacgctgtccagaagtatctggttgaagaagtt
cagaaggtttactactctcagggtgtacatatcaatgataagcacatagaggttattgcc
cgccagatgcttatcaaggtacgtattgattcttccggtgatacagaccttgttccgggt
gaactggtggacaagttccgttatgaggatatcaatgccaaggttttggccgaaggtggc
gaacctgcaactgcccataccgtgcttatgggtatcacccgtgcctcactcagcaccgaa
agctggctagcggcggcctccttccaggagaccacccgcgtccttactgatgccgccatt
tacggcaaggtggacaagctgtccggccttaaggaaaatgttatcataggcaagcttata
cctgcccagtgtaagtcctgcaaggaagctacagttgaaagagcggaacgtattgccgct
gcagcttctgcacccgctgtgagcagtctgccggaaaattgcctttag
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