Devosia sp. D6-9: GHV40_06800
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Entry
GHV40_06800 CDS
T10671
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
devd Devosia sp. D6-9
Pathway
devd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
devd00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GHV40_06800 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
devd03021
]
GHV40_06800 (rpoD)
Transcription machinery [BR:
devd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GHV40_06800 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
CC_Bre1
DUF16
Motif
Other DBs
NCBI-ProteinID:
QMV01208
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All DBs
Position
1377553..1379613
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AA seq
686 aa
AA seq
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MATKAANAKQKETEKPEGGAAPEAPDTSPLDLSDAAVKKLIKVAKKRGYVTYEELNSVLP
SEEVSSEQIEDIMAMFSDMGINVVDEDEVEEAEPDTEEESTEVAERTGTAVASKSNTREG
SDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDQ
LAAGEILLRDIIDLEATYAGPDAKQAAPVMQEVVEKAPAVEAKPAKAKEAPKKRASGDDE
DDYVPEEPEAPQDPVEEEDDDFENSLSLSAMEAELKPQVVETFDRIAEAYGKMRRMQDQH
AEDRAAQKVSNAADVKQVEALRGEVIADVKSLSLNASRIESLVEQLYDINKRLVRLEGRL
LRLAESYGIKRETFLQAYYGSEVDPGWTVSVGERDDKGWAEFIRRELDTINEIRGDISTL
ATETGLDIAEYRRIVHKVQKGEREAAIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE
GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTS
RQMLHEIGREPTPEELSEKLQMPLDKVRKVLKIAKEPISLETPIGDEEDSNLGDFIPDVN
AIQPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERI
RQIEAKALRKLKHPSRSRKLRSFLDN
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggccacaaaggcagcgaacgcaaagcagaaagagaccgagaagccggaaggcggcgca
gcccccgaggctcccgatacttccccactcgatctttccgatgccgcggtcaagaagctg
atcaaggtcgccaagaagcgcggctacgtcacttatgaagaattgaactcggtcctgccc
tccgaagaagtctcttccgagcagatcgaggatatcatggccatgttctcggacatgggc
atcaacgtcgtcgacgaggacgaggtcgaagaggccgagcccgacaccgaggaagaaagc
accgaagtcgccgagcgcacgggcacggcggttgccagcaagtccaatacccgcgaaggc
agcgatcgtacggacgatccggtccgcatgtacctgcgcgaaatgggctcggtggaactg
ctcagccgcgagggcgaaatcgccatcgccaagcgcatcgaggccggccgcgagaccatg
atcgcgggcctgtgcgaaagcccgctgaccttccaggccatcatcatctggcgcgaccag
ctcgctgccggtgaaatcctgctgcgcgacatcattgacctcgaagccacttatgccggc
cccgatgccaagcaggcggcgcctgtgatgcaggaagtggtcgaaaaggccccggccgtc
gaagccaagcccgccaaggccaaggaagcccccaagaagcgcgcatcgggcgacgacgag
gacgattacgtccccgaggagcccgaggctccgcaggatcccgtggaagaggaagacgac
gacttcgagaattcactgtcgttgtcggccatggaagccgagctcaagccgcaggtggtg
gaaaccttcgaccgcatcgccgaggcctatggcaagatgcgtcgcatgcaggaccagcat
gctgaggaccgcgctgcccagaaggtatcgaacgcggcagacgtcaagcaggtggaagcg
ctccgcggcgaggtgatcgccgacgtgaagtcgctctcgctcaacgcgagccgtatcgaa
agcctggtcgagcagctctacgacatcaacaagcgccttgtgcgcctcgaaggtcgcctg
ctgcgcctggccgagagctatggaattaagcgcgagacgttcctccaggcctattacggc
tcggaagtcgatcccggctggaccgtgtcggtcggcgagcgcgatgacaagggttgggcc
gaattcatccggcgcgaactcgacaccatcaacgaaatccgcggggacatctcgactctc
gcgaccgaaaccggtctcgatatcgccgaataccgccgtatcgtgcacaaggtgcagaag
ggcgagcgcgaagctgccatcgccaagaaggagatggtggaagccaacctccgtctcgtg
atctcgatcgccaagaagtacacgaaccgcggcctgcagttcctcgatctcatccaggaa
ggcaatatcggcctgatgaaggccgtcgataagttcgagtatcggcgcggttacaagttc
tcgacctatgcgacgtggtggattcgccaggcgatcacccgctcgattgccgaccaggcg
cgcaccatccgtattccggtgcacatgatcgagacgatcaacaagatcgtccgcacgagc
cgccagatgctccacgaaatcggccgtgagccgacgccggaagagctcagcgaaaagctg
cagatgccgctcgacaaggtccgcaaggtcctgaagatcgccaaggagccgatctcgctc
gaaacgccgatcggcgacgaggaagacagcaacctgggcgatttcatcccggatgtgaac
gccatccagccgattgacgcggccatccagtcgaacctgcgcgagacgacgactcgcgtg
ctggcttctctgaccccgcgtgaagagcgcgtgctgcgcatgcgcttcggcatcggcatg
aacacggaccacaccctcgaagaggtgggccagcagttctcggtgacgcgcgagcgtatc
cgccagatcgaagccaaggcgctccgcaagctcaagcaccccagccggtcgcgcaagctg
cgcagcttcctggataactga
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