Devosia sp. D6-9: GHV40_09050
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Entry
GHV40_09050 CDS
T10671
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
devd Devosia sp. D6-9
Pathway
devd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
devd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GHV40_09050 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
devd03021
]
GHV40_09050 (rpoC)
03400 DNA repair and recombination proteins [BR:
devd03400
]
GHV40_09050 (rpoC)
Enzymes [BR:
devd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GHV40_09050 (rpoC)
Transcription machinery [BR:
devd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GHV40_09050 (rpoC)
DNA repair and recombination proteins [BR:
devd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GHV40_09050 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_RND
RnfC_N
ApbA_C
Trigger_C
Motif
Other DBs
NCBI-ProteinID:
QMV01617
LinkDB
All DBs
Position
1817582..1821772
Genome browser
AA seq
1396 aa
AA seq
DB search
MNHHSHVMDPFNPQVPAQTFDQMKISIASPEKILSWSYGEIKKPETINYRTFKPERDGLF
CARIFGPVKDYECLCGKYKRMKFKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFL
KSLPSRIALLLDMTLKDIERILYFEHYVVLEPGLTPFSLHELLTEEQYLDAQDQYGADSF
TAKIGAEAIRDILLALDLEKIAADLRVEIAESTTELKPKKLAKRLKVVEQFIVSGNKPEW
MIMTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEK
RMLQEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIT
VGPELKLHQCGLPKKMALELFKPFIYSRLEAKGFSSTVKQAKKLVEKEKPEVWDILDEVI
REHPVLLNRAPTLHRLGIQAFEPMLIEGKAIRLHPLVCSAFNADFDGDQMAVHVPLSLEA
QLEARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSLMNENEPGQGMMFSSMAELEHA
LDTGVVTLHSKIKGRVVSFDENGNQTTEIVETTPGRMMIGQILPKHPAVPFATANQLMTK
KMISKMIDTVYRGCGQKETVIFCDRVMQLGFKNACDAGISFGKDDMVIPASKYKIVDETR
KQVEEFEQQYNDGLITQGEKYNKVVDAWAKCGDKVAEEMMKGIAAVQIDQETGRQKPINS
VYMMSHSGARGSPAQMKQLAGMRGLMARPDGSIIETPITANFKEGLTVLEYFNSTHGARK
GLADTALKTANSGYLTRRLVDVAQDSIITELDCGTERGLTMEPIVDAGQIVATLGQRILG
RTAADDIFNPATGDVLVAKGTLLEEKHVDAIEEARIQSVRIRSPLTCDMRQGCCAACYGR
DLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVVDSSFLEAGAEGKIEIRN
ANVAKISGGLLIAMGRNVTLAILDPEGKDRATHRVTYGAKIRVKDGDMVKRGQRLAEWDP
YTRPILADVDGEVGFEDLVDGASIAETTDETTGFTKRVVIDWRTSQRSDSLKPAITISRS
GAVAKLERGGEARYLLSVDAVIAVEPGEKVSAGDVLARIPLESAKTKDITGGLPRVAELF
EARRPKDHAIIAEIDGTIRFGRDYKNKRRVIIEPHEEGAEPVEYLIPKGKPFHLQEGDTI
EKGEYILDGNPAPHDILAIKGVEELARYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKV
EITDPGDSGLLKDEQIDKLDFDELNDQLVADGRKPAHANPVLLGITKASLQTRSFVSAAS
FQETTRVLTEAAISGKADLLEGLKENVIVGRLIPAGTGAMTTAAKLVAGKRDDLILEERR
RHSETAAIPAPSVPAE
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatcattctcacgtcatggacccgttcaatccgcaggttccggcgcagactttc
gatcagatgaaaatctcgatcgcgagcccggaaaagatcctgtcgtggtcctatggcgag
atcaaaaagcccgagaccatcaactaccgtacgttcaagcccgagcgtgacggcctgttc
tgcgcgcgtatctttggccccgtgaaggactacgagtgcctgtgcggcaagtacaagcgc
atgaagttcaagggcgtcatctgcgagaagtgcggcgtggaagtcacgctgtcgcgcgtc
cgccgcgagcgcatgggccatatcgagctagccgcgcccgtcgcccacatctggttcctc
aagtccctgccgtcccgtatcgcgctgctgctcgatatgacgctcaaggacatcgagcgt
atcctctacttcgagcactacgtcgttctcgagcccggcctgaccccgttcagcctgcat
gagctgctgaccgaggaacagtacctcgacgcccaggaccagtatggcgccgacagcttc
accgccaagatcggcgccgaggccatccgcgacatcctgcttgccctcgatctcgaaaag
atcgcggccgacctgcgcgtggaaattgccgagtcgacgactgaacttaagcccaagaag
ctcgccaagcgcttgaaggtcgtggagcagttcatcgtgtcgggcaacaagcccgaatgg
atgatcatgaccgtgatcccggtcattccgccggaactgcgtccgctggttccgctggat
ggcggccgctttgctacgtccgatctcaacgacctctatcgtcgcgtgatcaaccgtaac
aaccgcctcaagcgcctgatcgaactgcgtgcgccggacatcatcatccgcaacgaaaag
cgcatgctgcaggaagctgtggacgcgctgttcgacaacggccgccgtggccgcaccatc
accggtgcgaacaagcgtccgctcaagtcgctctcggacatgctcaagggcaagcagggc
cggttccgtcagaacctgctcggcaagcgcgtggactattccggccgttcggtgatcacc
gtgggtccggagctgaagctccaccagtgcggtcttcccaagaagatggccctggagctc
ttcaagccgttcatctattcgcgtcttgaagccaagggcttctcgtccaccgtcaagcag
gccaagaagctggtcgaaaaggaaaagccggaagtctgggatatcctggacgaggtcatc
cgcgagcacccggttctgctgaaccgcgctccgaccctgcaccgcctcggcatccaggct
ttcgagccgatgctgatcgaaggcaaggccattcgtctgcacccgctcgtctgctcggcc
ttcaacgccgacttcgacggcgaccagatggccgtgcacgtgccgctgtcgctcgaagct
cagctcgaagcccgcgtgctgatgatgtcgaccaacaacatcctgcacccggccaatggt
cagccgatcatcgtgccgagccaggacatcgtgcttggtctctattatctgtcgctcatg
aatgagaacgagcccggccagggcatgatgttctcgtccatggcagagctcgagcatgcc
ctggatacgggcgtggtgacgctccattccaagatcaagggccgtgtggtttcgttcgac
gagaacggcaaccagaccaccgagatcgtggagacgaccccgggccgcatgatgatcggg
cagatcctgcccaagcatccggctgtgccgttcgcgaccgcgaaccagctcatgaccaag
aagatgatctccaagatgatcgacaccgtgtatcgcggttgcggtcagaaggagacggtc
attttctgtgaccgcgtcatgcagctcggcttcaagaacgcgtgcgacgcgggcatttcg
ttcggcaaggacgacatggtcatcccggcgagcaagtataagatcgtcgacgagacccgt
aagcaggtcgaggaattcgagcagcagtacaacgacggcctgatcactcagggcgagaag
tacaacaaggtggtcgacgcctgggccaagtgcggtgacaaggtcgccgaagagatgatg
aagggcattgctgccgttcagatcgaccaggagaccggtcgtcagaagccgatcaactcg
gtttacatgatgagccactcgggcgcccgtggttcaccggcgcagatgaagcagcttgcc
ggcatgcgtggcctgatggcccgcccggacggctcgatcatcgagaccccgatcacggca
aacttcaaggaaggcctcaccgttctcgagtacttcaactcgacccacggtgcccgtaag
ggtctcgccgacaccgcgctcaagaccgccaactcgggttacctgacccgtcgtctggtg
gacgtggcgcaggactcgatcattaccgaactcgattgcggtactgagcgtggcctgacc
atggagccgatcgtggatgccggccagatcgtggccaccctcggccagcgtatcctgggc
cgtacggccgccgacgacatcttcaacccggcgacgggcgatgtcctggtggccaagggc
acgctgctcgaagagaagcatgtcgatgcgatcgaagaggcccgtatccagtcggtccgt
atccgctcgccgctgacctgtgacatgcgtcagggttgctgcgccgcctgctatggtcgt
gatctggctcgcggtactccggtcaatatcggtgaagctgtcggcgttatcgccgcgcag
tcgatcggtgaacccggcacgcagctcaccatgcgtacgttccacatcggtggcacggca
caggtggtcgacagctcgttcctggaagccggcgcagaaggcaagatcgagatccgcaac
gccaatgttgccaagatctcgggtggcctgctcatcgccatgggccgtaacgtgaccctg
gccatcctcgatccggaaggcaaggaccgggccacgcaccgcgtgacctatggtgccaag
atccgcgtcaaggacggcgacatggtcaagcgcggccagcgtcttgccgaatgggacccg
tacacccgtcccatcctggccgacgtcgatggcgaggttggcttcgaggacctggtggat
ggtgcttccatcgcggaaaccaccgacgaaaccaccggcttcaccaagcgcgtcgtgatc
gactggcggaccagccagcgttcggacagcctgaagccggcgatcaccatctcgcgcagc
ggcgctgtcgccaagctcgagcgtggtggcgaagcccggtacctgctctcggtcgacgcg
gttatcgcggtcgagccgggcgagaaggtctcggctggtgacgtcctggctcgtatcccg
ctggaaagcgccaagaccaaggacattaccggtggtctgccgcgcgtggccgaactgttc
gaagcacgtcgtccgaaggatcacgccatcatcgccgagatcgatggcaccatccgcttc
ggtcgcgactacaagaacaagcgtcgcgtcatcatcgagccgcatgaagagggcgccgag
cccgtcgagtacctgatcccgaagggcaagccgttccacctgcaggaaggcgacaccatc
gagaagggcgaatacatcctcgacggcaacccggcaccgcacgacatcctggccatcaag
ggcgtggaagagcttgctcgctacctcgtcaacgaaatccaggaagtctaccgtctccag
ggcgtgttgattaacgacaagcacatcgaagtgatcgttcgccagatgctgcagaaggtc
gaaatcaccgatccgggtgacagcggtctcctcaaggacgagcagatcgacaagctcgat
ttcgacgagctcaacgatcagctggtggccgatggccgcaagcccgcccacgcgaacccg
gtgctgctgggtatcaccaaggcgtcgctgcagacccgctcgttcgtgtcggccgcttcc
ttccaggaaacgacccgcgtgctcaccgaggctgccatttccggcaaggccgaccttctc
gaaggcctcaaggaaaacgtcatcgtcggccgtctcatcccggctggtaccggcgccatg
accacggctgcgaagctcgtggccggcaagcgcgacgacctcatcctcgaggaacgccgc
cgccacagcgagacggccgccatcccggcgccgtccgtgccggccgagtaa
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