Devosia sp. D6-9: GHV40_09475
Help
Entry
GHV40_09475 CDS
T10671
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
devd Devosia sp. D6-9
Brite
KEGG Orthology (KO) [BR:
devd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
devd03032
]
GHV40_09475 (topA)
03400 DNA repair and recombination proteins [BR:
devd03400
]
GHV40_09475 (topA)
Enzymes [BR:
devd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
GHV40_09475 (topA)
DNA replication proteins [BR:
devd03032
]
Prokaryotic type
DNA Topoisomerases
GHV40_09475 (topA)
DNA repair and recombination proteins [BR:
devd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GHV40_09475 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
HC2
DUF6429
Peptidase_M35
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QMV01697
LinkDB
All DBs
Position
complement(1887263..1889872)
Genome browser
AA seq
869 aa
AA seq
DB search
MKVVIVESPNKIKTINKYLGKDYEVMASFGHVRDLPAKDGSVRPDEDFAMSWEVDAKSNK
RLTDIARAVKESDELILATDPDREGEAISWHVLDVLKQKRAIRKDLPVRRVVFNSITQSA
ITEAMKHSRDIDEPLVDAYLARRALDYLVGFTLSPILWRKLPGSRSAGRVQSVALRLVCE
REAEIEKFKPQEYWSVLANLIEKGKTFEARLYSVDGQKTDKLDITSGDEAEAIRKAIEAG
QFTVESVEKKPTKRNPYAPFTTSSLQQDASSRLGFSPSRTMQIAQRLYEEGIITYMRTDA
VQMAPEGIDQARRAIEKEFGTAYLPSTPRIYQTKAKNAQEAHEAIRPTDMFRKPESLRGD
ADQQKLYGLIWRRTLASQMRPAEIERTTADIAVATDRAITLRAVGSVVTFPGFLALYGVE
AKEDRDEDDEDSRELPPLEVGDKPKLSSCDIEQHFTQPPARYTEASLIKKMEELGIGRPS
TYAATISTLIDRNYVRLEKRALIAEDRGRIVTAFLESFFTRYVEYGFTAGLEEQLDEISD
GKLDYKVVLREFWEDFSKATTEIKDLRVSEVLDSLNELLADHIFPAKEDGSDPRRCPTCG
TGTLSLKLGKYGAFIGCSNYPECKHTMQLSDAAAGGLSENAPSDGILGADPESGDNVYLK
SGRFGPYVQLGDEKEAKRSSLPKGWTPDSMTLDRALQLLSLPRLVGAHPETGLPITAGLG
RYGPFILHDGKYANLPDFEEVFTVGQNRAVDLLAAKAAGGFKRGGATPAAIKTFEHDGGP
ITVRSGRYGPYVNQGKINATIPKDAKPEDVTLDQALALLAARAEATGTKTKRAPAKKAAT
KAATTKKAPAKKAATAKKPAAKKAATKAE
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtcgtcattgttgaaagtccgaacaagatcaagacgatcaacaaataccttggc
aaggattatgaagtcatggccagcttcggccatgtccgcgatcttccggccaaggatggc
tccgttcgtccggacgaagacttcgccatgtcctgggaagtggatgccaagtccaacaag
cgcctgaccgatattgcccgtgcggtgaaggaatctgacgaactcatccttgcgaccgac
ccggatcgcgaaggcgaggcgatttcctggcacgtcctggatgtgttgaagcagaagcgc
gccatccgcaaggacctgccggtccgccgcgtggtgttcaattccatcactcagtcggcc
atcaccgaggccatgaagcactcgcgcgatatcgacgagccgctggtggatgcctatctg
gcccgccgcgccctcgactatctcgtcggcttcaccctctcgccgatcctgtggcgcaag
cttccgggctcgcgctcggccggtcgcgtgcaatcggtggctttgcgcctcgtctgcgag
cgcgaagccgagatcgaaaagttcaagccgcaggaatactggtcggtcctcgccaatctc
atcgagaagggcaagaccttcgaggcccgcctctattccgtcgatggccagaagaccgac
aagctcgacatcacgtcgggcgacgaggctgaagccatccgcaaggcgatcgaagccggc
cagttcacggtcgaaagcgtcgaaaagaagccgaccaagcgcaacccgtatgcgcccttc
accacatcgagcctgcagcaggatgcgtcctcgcgccttggcttctcgccatcgcgcacc
atgcagatcgcccagcggctctacgaggaaggcatcatcacctatatgcgtacggacgcc
gtgcagatggcgcccgaaggcatcgaccaggcgcgccgcgccatcgagaaggaattcggc
accgcctacctgccctcgaccccgcgtatctaccagaccaaggccaagaacgcgcaggaa
gcccacgaggccatccgcccgaccgacatgttccgcaagccggaaagcctcaggggtgat
gccgaccagcagaagctctatggcctgatctggcgccgcacgctggccagccagatgcgc
cccgccgagatcgagcgcaccaccgccgatatcgccgtcgccacggaccgcgccatcaca
ctgcgcgccgtcggttcggtcgtcaccttccccggcttccttgcgctctacggcgtcgag
gccaaggaggatcgtgatgaggacgacgaggacagccgcgaactgccgccgctcgaagtc
ggtgacaagccgaaactctcgtcctgcgatatcgagcagcacttcacccagccgccggcc
cgttacaccgaagccagcctcatcaagaagatggaagagctcggcatcggccgcccctcg
acctacgctgccaccatctcgaccctgatcgaccgcaattacgtgcggctcgaaaagcgc
gcgctgatcgccgaggaccgcggccgcatcgtcacggccttcctcgagagcttctttacc
cgctatgtcgaatacggcttcaccgccggtctcgaagagcagctcgacgaaatctccgac
ggcaagctcgactacaaggtcgtgctgcgcgagttctgggaggatttctccaaggcgacc
accgagatcaaggacctgcgcgtctccgaagtcctcgactccttgaatgagctgctggca
gaccacatcttccctgccaaggaagacgggtccgacccgcgccgctgcccgacctgcggc
accggcacgctctcgctcaagctcggcaagtacggcgccttcatcggctgctcgaactat
cccgagtgcaagcacaccatgcagctctcggacgccgccgccggcggtctctctgaaaat
gccccttcggacggcattcttggcgcagacccggagagcggcgacaacgtctatctcaag
tcgggccgtttcggaccttacgtgcagctcggggacgagaaggaagccaagcgctcttcc
cttcccaagggctggacgccggattcgatgacgctcgaccgagccctgcagctcctctcc
ctgccgcgcctcgtgggcgcgcatcccgagaccgggctgcccatcaccgccggcctgggc
cgctacggaccgttcatcctgcatgacggcaagtacgcgaacctgccggattttgaagaa
gttttcaccgtcggccagaaccgcgccgtagacctgctcgcagccaaggctgccggcggc
ttcaagcgcggcggggccaccccggcagccatcaagactttcgagcatgacggcggcccg
atcacggttcgctcggggcgctatggcccctacgtgaatcagggcaagatcaacgccacc
atccccaaggacgccaagcccgaggatgtgacgctcgaccaggccctcgccctcctggcc
gcccgcgccgaggccaccggcaccaagaccaagcgtgccccggccaagaaggccgcgacc
aaggctgccacgaccaagaaggcccccgccaagaaggcggcgacggcgaagaaacctgct
gccaaaaaggcggcaacgaaagcggagtaa
DBGET
integrated database retrieval system
