Devosia sp. D6-9: GHV40_20860
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Entry
GHV40_20860 CDS
T10671
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
devd Devosia sp. D6-9
Pathway
devd03030
DNA replication
devd03410
Base excision repair
devd03420
Nucleotide excision repair
devd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
devd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GHV40_20860 (polA)
03410 Base excision repair
GHV40_20860 (polA)
03420 Nucleotide excision repair
GHV40_20860 (polA)
03440 Homologous recombination
GHV40_20860 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
devd03032
]
GHV40_20860 (polA)
03400 DNA repair and recombination proteins [BR:
devd03400
]
GHV40_20860 (polA)
Enzymes [BR:
devd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GHV40_20860 (polA)
DNA replication proteins [BR:
devd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GHV40_20860 (polA)
DNA repair and recombination proteins [BR:
devd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
GHV40_20860 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GHV40_20860 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
NYN_YacP
AAA_25
HHH_5
Motif
Other DBs
NCBI-ProteinID:
QMV03789
LinkDB
All DBs
Position
4333411..4336323
Genome browser
AA seq
970 aa
AA seq
DB search
MHLLLVDGSSYVFRAFHALPPLNRKSDNLPVGCVQGFCNMLFKLTEDLKGDDQPTHMAVI
FDHSAKTFRDDIYADYKAHRPPPPEELVPQFPLTRSATRAFSIPSIEMEGWEADDIIATY
ACMARDAGGKVTIVSSDKDLMQLVEPSGSIRMLDTIPRPGQPPLRWIGVDEVFTKFGVTP
DKVIDVQALCGDAVDNVPGVPGIGVKTAAELINTYGDLETLLARAEEIKQPARRQKLIDN
AELARISKQLVTLSREVPVELGLDALVRVPIEPAALFPFLKAMEFNTITKRLAGILEADP
DAWEADPALAAKPVEAMGFDNAAKAEARAARLEASGRAEAALVAHAADVHERVRAIPLDH
AKYEIIRDAEHLRKWIEAIYAAGHVAVDVETTGLDNQTADLVGVCLSTAPGNGAYLPLDH
RTGADLLGGGRVEGQMPMADALAILKPMLEDRSILKIGHNFKYDLGILARYGIVTAPIDD
TLLLSYTLDGPRFNTMSELTSHWLGHGGIPIKDLIGTGKSQKTFAEVDIEVAARYGGEDA
DLTMRLWTLLKPRLPAENMTVVYETLERPLAPVLARMEGRGISVDRQILSRLSGDFAQRA
AAFEAEAQALAGQPFNLGSPKQLGDILFGVMGLPGGTKTKTGQWATGADVLDELALQGVP
LAKAVLEWRQLTKLMGTYTDALPSYINERTGRVHTSYSQASVLTGRLSSNDPNLQNIPVR
TEDGRKIRTAFVASPGKILISADYSQIELRVLAHIADIQALKDAFEEGLDIHAMTASEMF
GVPVEGMPSEVRRRAKAINFGIIYGISAFGLSNQLGIGRAEAGDYIETYFKRFPGIRDYM
DEMRRRVKADGFVETIFGRKVQFPNANSKHPAERAFVERASINAPIQGSAADIIRRAMVK
MEPALKKAGIEADMLLQVHDELIFEVDKGTEDKAMPVIAGIMESSAEPAVRLSVPLKVDA
HAAHNWDEAH
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgcacctgctgctcgtcgacggctcgtcctatgttttccgcgcgttccacgcgctgccg
ccgctcaaccgcaagtcggacaacctgcccgtggggtgcgtgcagggcttctgcaacatg
ctgttcaagctgacggaggacctcaagggcgacgaccagccgacgcatatggcggtgatc
ttcgatcattcggccaagacttttcgcgacgatatctatgccgattacaaggcgcaccgg
ccgccgccgcctgaggaactggtgccgcagtttccgctgacgcgttcggcgacgcgggcg
ttctccattccctccatcgaaatggaaggctgggaggccgacgacatcatcgccacctat
gcctgcatggcgcgcgatgccggcggcaaggtgaccatcgtgtcctcggacaaggatctg
atgcagttggtcgagcccagtggctcgatccgcatgctcgacaccatcccccgccccggc
cagccgccgctgcgctggatcggggtggacgaggtgttcaccaagttcggcgtgacgccg
gacaaggtcatcgacgtgcaggcgctctgcggcgacgccgtcgacaacgtgccgggcgtg
ccggggatcggcgtcaagacggcagccgagctcatcaatacctatggcgacctcgaaacg
ctgctggcacgggccgaagagatcaagcagccggcgcggcggcagaagctcatcgacaat
gccgagctggcgcggatttccaagcaattggtgacgctctcgcgcgaagtgccggtggaa
ctggggctcgacgcgctggtgcgcgtgcccatcgagccggcggcgctgttcccgttcctc
aaggcgatggaattcaacaccatcaccaagcggcttgccggcatcctcgaagccgacccc
gacgcctgggaggccgatccggcgctggcggccaagcccgtggaagccatgggctttgac
aatgcggccaaggccgaggcgcgtgcggcgcggctggaagcttccggtcgcgccgaggcg
gcgctggtggcgcatgcggcggacgtgcatgagcgggtcagggccattccgctcgaccac
gccaaatacgagatcatccgcgatgccgagcatctgcggaagtggatcgaggcgatctat
gcggccgggcatgtggccgtggatgttgaaaccaccgggctcgacaaccagacggccgac
ctcgtcggcgtgtgcctctcgacggcgccgggcaatggcgcctatctgccgctcgaccat
cgcaccggagccgacctgctcgggggcgggcgcgtcgaagggcagatgccgatggcggat
gcgctggcgatcctcaagccgatgctggaggaccgctcgatcctcaagatcgggcacaat
ttcaagtatgacctggggatcctcgcgcgttacggcatcgtgacggcgccgatcgatgac
acgctgctgctgagctatacgctggacgggccgcgcttcaacaccatgagcgagctcacc
tcgcactggctggggcatggcggcattccgatcaaggacctgatcggcaccggcaaatcg
cagaagacgtttgcggaagtcgatatcgaggtggcggcccgctatggcggggaagatgcc
gaccttaccatgcggctctggacgctgctcaagccgcgcctgccggccgagaacatgacg
gtggtctacgagacgctggagcgtccgctggcgccggtgctggcgcggatggaggggcgc
ggcatttcggtggatcgacagatcctctcgcggctttcgggcgatttcgcccagcgcgcg
gcggcgttcgaggcggaggcgcaggccctggccgggcaaccgttcaacctgggctcgcca
aagcagctcggcgatatcctgttcggcgtcatggggctgcccggcggcaccaagaccaag
accgggcaatgggcgacgggcgccgacgtgctcgatgaattggcgttgcagggcgtgccg
ctggccaaggcggtgctcgaatggcgccagctcaccaagctcatgggcacctatacggat
gccctgcccagctacatcaacgagcgcacggggcgggtgcatacgagctacagccaggct
tcggtgctgacggggcggctgtcctcgaacgatccgaacctgcagaacattccggtgcgc
accgaggatggccgcaagatccggacggcgttcgtggcgagccccggcaagatcctgatc
tcggcggattacagccagatcgaactgcgcgtgctggcccatatcgccgatatccaggcg
ctcaaggatgcgttcgaggaagggctcgacattcacgccatgacggcttccgaaatgttc
ggggtgccggtggagggcatgccgtccgaagtgcggcggcgagccaaagccatcaatttc
ggcatcatctacggcatttccgccttcgggctgtccaaccagctcggcatcgggcgggcg
gaagcgggcgactatatcgagacctatttcaagcgcttcccgggcatccgcgattatatg
gacgagatgcgccggcgcgtgaaggcggacgggttcgtggagaccattttcgggcgcaag
gtgcagttccccaacgctaattccaagcatccggccgaacgcgccttcgtggaacgcgcc
tcgatcaacgcccccatccagggctcggccgccgacatcatccgccgcgccatggtcaag
atggagccggcgctgaaaaaggccggcatcgaagccgacatgctgctgcaggtccacgac
gaactgatcttcgaggtcgacaagggcacggaggacaaggcgatgccggtgatcgcgggg
atcatggaaagctcagcggaaccggccgtgaggttgtcagtgccgctgaaggtggatgcg
catgcggcgcataattgggatgaggcgcattag
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