Devosia sp. MC521: H4N61_08800
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Entry
H4N61_08800 CDS
T08408
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
devo
Devosia sp. MC521
Pathway
devo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
devo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H4N61_08800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
devo03019
]
H4N61_08800
03009 Ribosome biogenesis [BR:
devo03009
]
H4N61_08800
Enzymes [BR:
devo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
H4N61_08800
Messenger RNA biogenesis [BR:
devo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H4N61_08800
Ribosome biogenesis [BR:
devo03009
]
Prokaryotic type
rRNA processing factors
H4N61_08800
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QMW64377
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All DBs
Position
1847855..1850575
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AA seq
906 aa
AA seq
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MATKRMLVDAIHPEETRIVVTEGNRLEEFDFESATRRQLRGNIYLAKVTRVEPSLQAAFV
EYGGNRHGFLAFSEIHPDYYQIPVADREALLLDEETSEDEHFEEAAPAAKAVSETETSAE
ADADSEGDASHIEQAPANTEPVESIGGADALEEVPERRRSSHQRRHQYKIQEVIKRRQVM
LVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNAADRKRLKEITSDLE
VPQGMGVILRTAGASRTKAEVKRDFEYLMRLWESVRTLTLESEAPCLVYEEGSLIKRTIR
DLYNKEIDEVLVAGDAAFREAKDFMAMIMPSHAKNVMLYKDDQPLFSKYGVEAQLDQMFS
PVVTLPSGGYIVINPTEALVSIDVNSGRSTKEHNIEDTALQTNLEASDEVARQLRLRDLA
GLIVIDFIDMMENRSNRAVERRLKDALKDDRARIQVGRISHFGLMEMSRQRIRFGVVESS
THKCPICDGTGLVRSTESLALMIMRHIEEHVMRKPGQSINVRVPVEVALYILNYKRDTLT
LLEARNNLSITITADGKMTGHQFAIEKGETRVASYVDQRAAAHVRVDSAVIEDAADEDVA
EAESDDEEEEIPAKSADAEEGEGNNRRRRRRRRRGERGERNGDSNPAAQQVAANDDGEES
EEASASEATPSEAEAADDADSETRRRRRRGRRGGRRNRRDGEAEAAQAIGEAVAAEVSTV
EADIAPEADTASEPTPVLEVAASAPHAEPATPAASEAPAKPKRTRRKKVTETEESAPAET
TPVDATPAETAAPAAAEAEPAEKPKRKSRARKPKADAADAAPAADASAAAPSVAEAAPVV
AASATEAPADSDKPKRKPRVKKELPPEGLVVTSSAPSEAAAPEIENAEAPGEKKKVGWWQ
RRLGLN
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaagagaatgctggtggatgccatccaccccgaagaaactcggattgtagtc
actgaaggaaaccgtctcgaagagttcgatttcgaatcggcaacccgccgccagctgcgc
ggcaatatttatctagccaaggttactcgggttgaacccagcctgcaggcagcctttgtt
gaatatggtggcaatcgccacggcttcctcgcgttcagcgaaatccaccccgattactac
cagatcccggtagccgatcgcgaagccctgctgctcgatgaagagaccagcgaagacgaa
cacttcgaagaagccgcgccagcggctaaagctgtttctgaaacagaaacttcggctgaa
gccgacgcagactccgaaggcgatgccagccacattgagcaggcaccagccaatactgag
ccagtcgagtccatcggcggcgcagacgcgcttgaagaagtgccagagcgtcgtcgctcc
agccaccagcgccgtcatcagtataagattcaagaagttatcaagcgccgccaggtcatg
ctggttcaggtggtcaaggaagagcgcggcaataagggcgctgctctcaccacctacctc
tcgcttgctggccgttattcggtgctgatgccaaacaccgcccgtggtggtggtatttcg
cgcaagattaccaacgctgctgatcgcaagcgcctcaaggagatcacctccgatctcgag
gtgccacagggcatgggcgtcatccttcgcacagccggtgcttcgcgcaccaaggctgaa
gtgaagcgcgactttgaatatttgatgcgcctttgggaaagtgtccgcacgctgaccctt
gagagcgaagcgccatgcctcgtttacgaagaaggttcgctgatcaagcgcaccattcgt
gacctctataacaaggagatcgatgaagttctcgtggctggcgacgctgccttccgcgaa
gccaaggacttcatggcaatgatcatgccgagccacgctaagaacgtgatgctctacaag
gatgatcagccgctgttctccaagtacggcgttgaagcccagctcgaccagatgttctct
ccggtcgtcaccctgccctccggcggctacatcgttatcaacccaaccgaagcgctggtc
tccatcgacgtgaactcgggtcgttcgaccaaagagcacaacatcgaagacaccgctctc
cagaccaatctggaagcctccgacgaagtggcgcgccagctgcgtctgcgcgaccttgcc
ggtctcatcgttatcgactttatcgatatgatggaaaaccgctcgaaccgtgctgttgag
cgccgtcttaaggacgccctcaaggacgatcgcgcgcgcattcaggttggccgcatttcg
cactttggcctcatggaaatgagccgtcagcgcatccgctttggtgttgttgaaagctcg
acccacaagtgcccaatctgcgatggcacgggtctggttcgttcgaccgaaagcctagcg
ctgatgatcatgcgccacattgaagaacacgtcatgcgcaagcctggccagtcgatcaat
gtccgcgttccggtcgaagtcgctctctacattctgaactacaagcgtgacacactcacg
ctgctggaagcccgcaacaatctctccatcaccattacggctgatggcaaaatgaccggc
caccagttcgcgatcgaaaagggcgaaacccgcgtcgcgtcctatgttgatcagcgcgca
gcagcgcacgtgcgtgtcgacagcgccgtcatcgaagacgcagcggacgaagacgtcgcc
gaagctgaaagcgacgacgaagaagaagaaatcccggccaagtctgccgacgccgaagaa
ggcgaaggcaataatcgccgtcgtcgtcgtcgccgccgtcgcggtgaacgtggcgaacgc
aatggcgacagcaatcctgcggcgcaacaggttgcggccaatgacgatggtgaagaaagc
gaagaggcaagcgcctccgaagcgaccccatctgaagcggaagcagccgatgacgcggat
agcgaaacccgccgccgccgtcgccgtggccgccgtggtggtcgtcgcaaccgtcgtgac
ggtgaagctgaagccgcacaggccatcggcgaagctgttgctgcagaggtaagcacggta
gaagctgacatcgcaccagaagcagataccgcttctgaaccgacgccagtcctcgaagtc
gctgcctcagcaccacacgctgaacctgcgacacctgctgctagcgaagctccggcaaag
ccaaagcgcacgcgccgcaagaaggtcaccgaaaccgaagaatctgcaccagcagaaacc
actccggtcgatgcgaccccagctgagacagccgctccggccgccgccgaagcagaaccg
gctgaaaagccaaagcgcaaatctcgtgcgcgcaagccaaaggccgacgccgctgatgct
gcgccagcggccgatgcgagtgcagccgctccttccgtcgctgaggccgcgcccgttgtc
gccgcgtccgctacagaggccccagcggactctgacaagccgaagcgcaagccacgcgtg
aagaaggaactgccgccagaaggtctggtcgtcacttcgtccgcgccttctgaggcagca
gcgccagaaattgagaacgccgaagcgcccggcgaaaagaagaaggtcggttggtggcag
cgccgccttggcctgaactaa
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