KEGG   Devosia sp. SD17-2: NYQ88_01045
Entry
NYQ88_01045       CDS       T11806                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
devs  Devosia sp. SD17-2
Pathway
devs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:devs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NYQ88_01045 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:devs03021]
    NYQ88_01045 (rho)
   03019 Messenger RNA biogenesis [BR:devs03019]
    NYQ88_01045 (rho)
Transcription machinery [BR:devs03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     NYQ88_01045 (rho)
Messenger RNA biogenesis [BR:devs03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     NYQ88_01045 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_22 AAA_25 ATPase_2 S1CSD-TOTE-2 AAA Fungal_virus_P2_C DUF6360 AAA_16 DnaB_C AAA_14
Other DBs
NCBI-ProteinID: WEJ33440
LinkDB
Position
204977..206242
AA seq 421 aa
MQNIKLSELKAKSPAELLAFAEELEVENASTMRKQELMFAILKELAAQDINIVGEGVVEV
LPDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTVEGEIRSPKEGERYFALLKVS
TINFEDPEAVRHKVNFDNLTPLYPEERLRMEMPDPTLRDRSARLLDLVAPLGKGQRALIV
APPRTGKTVLLQNIAQSIATNHPECYLIVLLIDERPEEVTDMQRSVRGEVISSTFDEPAS
RHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEDGGSLTIISTALIDTGSRMDEVIFEEFKGTGNSEIILDRKVADKRIFPA
LDITKSGTRKEELLVEADILKKMYVLRRILNPMGTIDAMEFLVDKVRQTKTNSDFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcagaatatcaagctcagcgagctcaaggccaaatccccggccgaattgctggcgttc
gccgaagaactcgaagtcgagaacgcttcgaccatgcgcaagcaagagttgatgtttgcc
atcctcaaggaactggcagctcaggacatcaacatcgttggtgagggtgtggtcgaagtt
ctgccagacggttttggcttcctgcgctcacccgacgcaaactaccttccagggccggac
gatatctatgtcagccccagccagatccgccgcttcggcctgcggaccggcgacacggtc
gagggcgaaatccgctctcccaaggaaggcgagcgctacttcgcgttgctcaaagtaagc
accattaacttcgaagatcccgaggcggttcgccataaggtcaacttcgacaacctcacc
ccgctctatcccgaagagcggctgcggatggaaatgcccgatccgacgctgcgcgatcgt
tctgcgcgcctgctcgatctggtggcgccgctcggcaagggccaacgcgcgttgatcgtt
gcgcctccgcgtactggtaagaccgtattgttgcaaaatattgcacaatcgatcgcgacc
aatcaccccgaatgctatctcatcgtgctcctgatcgatgagcgtccggaagaagtgacc
gacatgcagcgctccgtgcgcggcgaagtcatctcctcgacctttgacgaaccggcaagc
cgccacgtgcaggtcgccgagatggtcatcgaaaaggccaagcgccttgtcgagcacaag
cgcgacgtggttatccttctcgactccatcacccgactgggccgcgcctacaacaccgtc
gttccaagctccggcaaggtcctcaccggtggtgtcgacgccaatgccctgcagcgcccg
aagcgcttcttcggtgcggcgcgcaatatcgaagacggcggttcgctgaccatcatctcg
acggcgctgatcgataccggcagccgcatggacgaagttatctttgaagaattcaaaggc
acgggtaactcggaaatcatcctcgaccgcaaggttgcggacaagcgcatcttcccggcg
ctcgacatcaccaagtcgggcacccgcaaggaagagctgctggtcgaagccgacatcctc
aagaagatgtatgtgctgcgccgcatcctcaacccgatgggcacgatcgatgcgatggaa
ttcctggtcgacaaggtccgccagaccaagaccaattccgatttcttcgactcgatgaat
acctga

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