Devosia sp. SD17-2: NYQ88_11850
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Entry
NYQ88_11850 CDS
T11806
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
devs Devosia sp. SD17-2
Brite
KEGG Orthology (KO) [BR:
devs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
devs03032
]
NYQ88_11850 (topA)
03400 DNA repair and recombination proteins [BR:
devs03400
]
NYQ88_11850 (topA)
Enzymes [BR:
devs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NYQ88_11850 (topA)
DNA replication proteins [BR:
devs03032
]
Prokaryotic type
DNA Topoisomerases
NYQ88_11850 (topA)
DNA repair and recombination proteins [BR:
devs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NYQ88_11850 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
HC2
HTH_24
Toprim_4
MarR_2
DUF6429
Motif
Other DBs
NCBI-ProteinID:
WEJ31605
LinkDB
All DBs
Position
2411321..2414005
Genome browser
AA seq
894 aa
AA seq
DB search
MKVVVVESPAKAKTINKYLGKDYEVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDTAAKK
RIADIAGALKGADGLILATDPDREGEAISWHILDVLRAKKALKKDVPVQRVVFNAITKDA
VTAAMAKPRDIDMPLVDAYLARRALDYLVGFTLSPILWRKLPGSRSAGRVQSVALRLVSD
RESEIEKFKPQEYWSVEAQLAQAGKSFLARLFSVDGKRTDKLDITSGDDAAELKKLIEAG
QFNVSNVEKKPTKRNPYAPFTTSSLQQDASSRLGLSPSRTMQIAQRLYEDGLITYMRTDA
VQMAPEGIAMARSVIGKYFGEEYLPEKARVYQTKAKNAQEAHEAIRPTDMFKRPESLSLD
PDQQKLYSLIWKRTLASQMASAEIDRTSVDIAVNVPGRAVALRATGSVVTFPGFLTLYGV
EAKTDAEEEDDEGRELPPLKVGDKPDLKKVEIEQHFTQPPARYTEASLIKKMEELGIGRP
STYAATLTTLKDRNYVKLEGKALHPEDRGRIVTAFLESFFNRYVEYGFTAGLEEQLDQVS
AGELDYKVLLRDFWKDFTAATEEIKDLRVSEVLDALNDLLADHIFPPREDGTERRQCPTC
GTGTLSLKLGKFGAFIGCSNYPECKHTTQLSDAANGNAAQAGAGDGVLGTDPESGEEVHL
KTGRFGPYVQLGDGKEPKRSSLPKGWEPDSLTLEKALQLLSLPREVGLHPETGLPISAGL
GRYGPFILHDGKYANLPDVEEVFTVGINRAVDLIAQKAAGGFTRGGGAAVAAIQTFEHDA
GPITVRAGRYGPYVNQGKINATIPKDVKPEDVTLDQAIAWIAARAEVTGTKVKKAPAKKA
AAKKPAAKKATTKKAAADDETAEKKPAAKKPAAKKAAPKKAAAKSTVTDEDVPF
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtcgtcgtcgttgaaagtccggccaaggccaagacaatcaacaaatatctgggc
aaggactatgaagtcctggccagtttcggccatgtccgcgacttgcccgccaaggacggt
tcggtgcgtccggatgaagatttcgccatgtcctgggaagtcgacaccgccgcaaagaag
aggattgccgacattgccggcgcgctcaagggcgctgacggtctgatcctggcaaccgac
cctgatcgcgaaggcgaggccatttcctggcatattctggacgtcctgcgcgccaagaaa
gcgctcaagaaggacgtgccggtgcagcgcgtcgtgttcaacgccattaccaaggatgcc
gtcacggcagccatggccaagccgcgcgacatcgacatgccgctggttgacgcctatctc
gcgcgccgcgccctcgattatctcgtgggcttcacgctctcgccgatcctgtggcgcaag
ctgcccggctcgcgttcggccggccgcgtgcagtcggtggccctccgcctcgtctcggac
cgcgaatccgagatcgaaaaattcaagccgcaggaatactggtccgtcgaggcgcagctg
gcccaggccggcaagagtttcctcgcgcgtctgttctccgtcgatggcaagcgcaccgac
aagctcgacatcacgtcgggtgacgacgctgccgagctgaaaaagctgatcgaagccggc
cagttcaacgtctccaacgtcgagaagaagccgaccaagcgcaatccgtatgcgccgttc
accacctcgtcgctgcagcaggatgcgtcttcgcgcctcggcctctcgcccagccgcacc
atgcagatcgcccagcgcctctacgaggatgggttgatcacctatatgcgtaccgacgcc
gtgcagatggcccccgagggcatcgccatggcgcgctcggtcatcggcaaatatttcggt
gaagaatatctcccggaaaaagcccgcgtctatcagaccaaggccaagaacgcccaggag
gcccacgaggccatccgccccaccgacatgttcaagcgccccgagagcctcagcctcgat
cccgaccagcaaaagctctattcgctgatctggaagcgcacgctcgcctcgcagatggcc
tcggccgagatcgaccgcaccagcgtcgacatcgccgtcaacgtccccggacgtgccgtc
gccctgcgcgccaccggctcggtcgtcaccttccccggcttcctcacgctctatggcgtc
gaggccaagaccgatgccgaggaagaagatgacgaggggcgcgaactgccgcccctcaag
gtcggcgacaagccggacctcaagaaggtcgagatcgagcagcatttcacccagccgccc
gcccgctacaccgaggcgagcctgatcaagaagatggaagagctcggcatcggccggccg
tccacctatgcggccacgctgacgacgctcaaggaccgcaactacgtcaagctcgagggc
aaggcgctgcatcccgaagatcgcggccgcatcgtcaccgccttcctcgagtcgttcttc
aaccgctatgtcgaatacggctttaccgcgggccttgaagagcagctcgaccaggtctcg
gccggcgaactcgactacaaggtgctgctgcgtgatttctggaaggatttcaccgccgcc
accgaggaaatcaaggatctgcgcgtgtcggaagttctcgacgcgctcaatgatctgctg
gcggaccatatcttcccgccgcgcgaagacggcaccgagcgtcgtcagtgcccgacctgc
ggcaccggcacgctctcgctcaaactcggcaagttcggcgccttcatcggctgctcgaac
tatcccgagtgcaagcacacgacccagctctccgacgctgccaatggcaatgccgcccag
gctggcgccggtgacggcgtcctcggcaccgatcccgagagcggcgaagaagtccatctc
aagaccggtcgcttcggcccctatgtccagcttggcgacggcaaggagcccaagcgctcc
tccctgcccaagggctgggagcccgactcgctgacgctcgaaaaggcgctccagctgctg
tcgctgccgcgcgaagtcggtctccacccggaaaccggcctgccgatttcggcaggtctc
gggcgctatggcccattcatcctccacgacgggaaatacgccaatctccctgatgttgaa
gaggtttttaccgtcggcatcaaccgcgcggtcgatctcatcgcgcaaaaggccgctggc
ggcttcacgcgtggcggcggcgctgccgtggctgcgatccagacctttgagcatgacgcc
ggcccgatcacggtccgcgccggtcgctatggcccctatgtcaatcagggcaagatcaac
gcgaccatccccaaggatgtcaaacccgaggacgtcacgctcgatcaggccatcgcctgg
atcgctgcccgcgccgaggttaccggcaccaaggtgaagaaggccccggccaagaaggct
gcagccaaaaagcccgcggccaagaaagcgaccaccaagaaggccgctgccgacgacgag
actgccgagaaaaagccggctgccaagaagcctgctgccaaaaaggctgccccgaagaag
gccgcagcaaaatcgaccgtcaccgacgaagacgtgccgttctga
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