Dehalogenimonas sp. WBC-2: DGWBC_0242
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Entry
DGWBC_0242 CDS
T03938
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
dew
Dehalogenimonas sp. WBC-2
Pathway
dew03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dew00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DGWBC_0242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dew03400
]
DGWBC_0242
Enzymes [BR:
dew01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
DGWBC_0242
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
DGWBC_0242
DNA repair and recombination proteins [BR:
dew03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DGWBC_0242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
DUF7573
Zn_ribbon_6
DZR
Motif
Other DBs
NCBI-ProteinID:
AKG52929
UniProt:
A0A0F7GC24
LinkDB
All DBs
Position
224906..225718
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AA seq
270 aa
AA seq
DB search
MPELPEVETVTNEIRPYVLGRMIENVEVFWPGTVRGHSADDFIARLKGQCVAGVFRRGKY
IVWQLSSGEKLLTHLKMTGALIAARPDSEAPPYNRVQITLDDGTRIYFRDPRKFGRMKLI
SDNAVLEGIGPEPLEPEFTVEVFKSILRKRKSPIKPTLLDQTLIAGIGNMYADEALFEAK
IHPLRPADSLTPPEYESLHHAIRRILTSAIASKGASISNYVRPGGELGQAHFSFKVAHKR
GENCTRCGTPLDRIVVRGRGTYLCHECQRI
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattgcccgaagttgaaacggtaaccaatgaaatccgtccttatgtcttaggc
cgaatgatagaaaacgtcgaagttttctggcccggaactgtccgcggacactctgcggat
gattttattgccagactcaaggggcaatgtgtagcgggtgtttttcgacggggtaaatac
attgtgtggcagctttccagcggggaaaagttgctaactcatctcaagatgacaggtgcg
ctcatcgcagccaggccggattccgaagctcctccttacaaccgggtgcagataactctc
gatgatggaacaaggatttatttccgcgatccgaggaaatttggccggatgaaattgatc
agtgataatgcggttttggaaggaatcgggccggaacctcttgaaccggagttcaccgtt
gaagtatttaaatcaatcctaagaaaacgtaaaagcccgattaagccgacccttcttgat
cagacactcattgccggtataggcaacatgtacgctgatgaggcattatttgaagcaaaa
attcacccactccgcccggcggacagcctcacgccgccggaatatgaaagtcttcatcac
gccatcaggcgcatattaaccagcgccatcgcaagcaaaggcgccagtatctcaaattat
gtccgtcccggtggtgaactgggacaggcacatttttctttcaaagtggcccataaacgc
ggtgagaattgtacccgctgcgggacaccattggatagaatagttgtcagaggcagggga
acatatctttgccatgaatgtcagcggatctaa
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