Dehalogenimonas sp. WBC-2: DGWBC_1041
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Entry
DGWBC_1041 CDS
T03938
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
dew
Dehalogenimonas sp. WBC-2
Brite
KEGG Orthology (KO) [BR:
dew00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DGWBC_1041 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dew03021
]
DGWBC_1041 (rpoD)
Transcription machinery [BR:
dew03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DGWBC_1041 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
CENP-B_N
Sigma70_r4_2
DUF8052
Motif
Other DBs
NCBI-ProteinID:
AKG53697
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Position
1008402..1009901
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AA seq
499 aa
AA seq
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MERDNDMAESPSNRAENISKSMVVIDDEEPKDASDINPEDLNEEDNGTDSDSIPEEAEHL
LPEMDAPLEQLEHGIVDDPVRMYLHEIGRVPLLNAETEKMLAKKMEAGKRIREIREVCKE
KDGHNPSSVEVMICMLQELVKAAETVAMLQKQLGLEVSTNFKDAVFSPKLRASIDQEIDQ
ELTKSIAEEQGAPVSQIEQALIDLSLNSELLPRKVLEGIPAETDLSEINELVAGAAFVNR
LNNYEHQFKNYLDTVEIEARKAERHLIQANLRLVVSVAKKHIGRGMPLLDLIQEGNIGLI
RAVEKFDFHRGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLLSISRSLSQK
LGREPTPDEIAVEMELPPEKVREIAKVSQLPVSLESPIGEEEDSHLGDFIEDQNALPPPD
AASRQLLKEQIDSVLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAK
ALRKLRHPTRSRKLKDYLE
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atggaaagagacaatgacatggctgaaagtccgagtaacagggcggagaacatcagtaaa
tcaatggtagtaatcgatgatgaagagccaaaagacgcctctgacattaatccggaggat
ctaaacgaagaggataacggaacagactcagattctattcctgaagaagctgagcatttg
ctgccggaaatggacgcaccgctggaacaattagagcacgggattgtagatgacccggtg
cgtatgtaccttcatgagatcggccgggttccgttgctcaatgccgaaaccgagaagatg
ttagccaagaaaatggaagccggcaagcgtatccgtgaaatccgtgaagtatgcaaggaa
aaagacggacacaacccttcttcggtagaagtaatgatttgtatgctgcaggaattagtg
aaggccgctgagacggtcgctatgttgcaaaaacaactggggctggaggtatccaccaat
ttcaaggatgccgtgttctctcccaaattacgtgccagtattgatcaggaaattgaccag
gaactgaccaagagtatcgctgaggagcagggagcgccggtatctcagatcgaacaagca
ctaattgacctgtcactgaatagcgaactcttgcctagaaaagtccttgaaggcataccc
gccgaaacagacttgtctgaaatcaatgaattagtggccggtgctgccttcgtcaaccgt
ttgaataactacgaacaccagtttaaaaactaccttgacactgttgagatcgaggctcgg
aaagccgaacgtcatcttatccaggccaacttgcgtctggtggtcagtgtggctaaaaag
catatcggacgcggcatgcctttgcttgatttaatccaggaaggcaatatcggtctcatc
cgtgccgtggaaaaatttgattttcatcgcggtttcaagttctcaacctacgcaacctgg
tggatacggcaggccatcacccgggctattgccgatcaggcgcgtactatccgcatcccg
gtgcatatggtagaaacaattaataaactgctttcgatatcccgctctttatcgcaaaaa
ctcggccgtgaaccaacacccgatgagattgcagtggaaatggaactgccccctgaaaaa
gtccgtgagattgccaaagtctctcagttacccgtatcgcttgaatcacccataggtgaa
gaagaagattcacaccttggtgatttcatagaagatcaaaacgctctgccgccgcctgat
gccgcttcaagacaattactcaaggagcagatagatagtgtgctaggcagccttactccc
cgtgaacggcgtgttcttcagcttcgtttcggtctggaagacggccgcagccggacgctg
gaggaagtgggtaaagagttcaatgtcacccgtgaacggatacggcagatagaagccaag
gcgttgcgtaaacttcgtcatcccacccgcagtcgcaaactaaaagactatttagagtag
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