Dehalogenimonas sp. WBC-2: DGWBC_1110
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Entry
DGWBC_1110 CDS
T03938
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dew
Dehalogenimonas sp. WBC-2
Pathway
dew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DGWBC_1110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dew03019
]
DGWBC_1110
03016 Transfer RNA biogenesis [BR:
dew03016
]
DGWBC_1110
Enzymes [BR:
dew01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DGWBC_1110
Messenger RNA biogenesis [BR:
dew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DGWBC_1110
Transfer RNA biogenesis [BR:
dew03016
]
Prokaryotic type
tRNA degradation factors
DGWBC_1110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_2
DUF3016
aRib
KH_2
Motif
Other DBs
NCBI-ProteinID:
AKG53765
UniProt:
A0A0F7CTZ1
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All DBs
Position
complement(1073286..1075487)
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AA seq
733 aa
AA seq
DB search
MPLIKTFERNIGGRKLTIESGKLAWQANGAVTLRYGDTQILVTAVIAKEPRPGIDFLPLT
IDVEERMYAAGRIPGGFIRREGRPSEQATLSSRLADRPIRPLLPKNWRREIQIIVTVLAT
DHENDPDVLGVIGASCALGISEMPFEGPLSAVHVGYIDGKFVLNPTFSQMPDSTLDVVVA
STKRAVTMLEAGAHEAPEALMLEAIRFGHQANQEIIALQEEIIAAIGKTKWQIDVAAADA
GLAAKVTAIVENKLAGAFYQADKAQRQENLENIREELTNALSDEYDSGEMMTAYDKKIRH
LVRSTILDKKERVSGRGIEEIRELSAEVGILPRVHGSALFSRGQTQILNITTLGSLQMEQ
KLDNISPETSKRYMHHYNFPPYSTGETKRVGVTGRREIGHGALAERALLPVIPSEAEFPY
SIRLVSEALSSNGSTSMASTCASSLSLMDAGVPIKKAVAGISIGLVTDDTDPGRFVTLTD
IEGLEDNYGDMDFKVAGTCDGITAIQLDIKLKGISFEVIERTLEQARTARLQILEVMDKA
LKTNRAELSPYAPRMYKLKIDQGKIGAVIGPGGRVIRNIIEETKTTIDIEDDGTVIIGAT
DGESAKRAISMIEGLTKDVEAGTVYTGKVTRVMSFGAFVEILPGKEGLVHISELANHRVE
KVEDVLKNGDTVTVKVTEIDSQGRINLSIRALLAPPTAEEQEAMRNQGPPQGGFRRSGPG
APLNQGDRPPFRR
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
ttgcctttaattaaaacatttgaacgcaacataggcggtcgtaaacttaccatagagagc
ggtaagctggcctggcaggccaacggcgctgtcactctgcgctacggcgatacccagata
ctggttaccgccgtcattgccaaagaaccccggcccggcattgatttcttgccattgacc
attgatgttgaagagcggatgtatgccgcgggcagaattcccggtggttttatccggcgg
gaaggccgcccttcagagcaggccaccctttccagccgcctggcagaccggcccattcgg
ccactgctacccaaaaactggcgtcgtgagatccagatcatcgttaccgttttagctact
gatcatgagaatgaccctgatgtccttggggtgatcggagcctcttgtgctcttggtatc
tctgaaatgccgtttgaaggtccgctttccgccgttcacgttggttatatagacggtaag
tttgtgcttaaccccaccttttcgcagatgccggacagcacccttgatgttgttgtggcc
agcaccaaaagagcggtcactatgctagaagctggcgctcacgaggcgccggaggctctg
atgctggaggctatccgtttcggccatcaggccaaccaggaaatcatcgcccttcaggaa
gagataatcgccgctattggcaaaactaaatggcaaattgatgtagcggctgctgacgcc
ggacttgcggctaaagttaccgctatcgttgagaacaagctggccggagccttttatcag
gctgacaaggcgcagcgtcaggaaaatctggaaaatatccgcgaagaactcaccaatgcc
ttgagcgatgagtatgacagtggtgagatgatgactgcctacgacaaaaaaatccgccat
cttgtccgctcaactattctggataaaaaagagcgggtcagcggtcggggtatagaggaa
atccgtgaactgtccgccgaggtcggtattttaccccgtgttcatggttcagcccttttt
tcccgcggacaaactcagattttgaatattaccacactgggttctctccagatggagcaa
aaactggataatatttcaccagaaacctccaaacgttacatgcaccattataattttccg
ccctattctaccggtgagaccaagcgtgtcggtgttaccggccgccgtgaaatcgggcat
ggagcactggctgaacgcgcccttttgccggttatcccgtctgaggctgagtttccttat
tccatccggctggtgtctgaagcccttagttccaacggctccacttccatggccagcacc
tgcgcttcatcactgtcgctcatggatgccggtgtgcctattaaaaaggcagtagccggt
atttcgattggtcttgtcactgatgacactgaccccgggcggtttgttaccttgaccgat
attgaaggattggaagacaattacggcgatatggacttcaaagtggcgggcacctgtgac
ggtattactgccattcagctggacatcaaactcaaaggtattagttttgaggtcattgag
cggacgttagagcaggccagaactgccagattgcagattcttgaggtcatggacaaggca
cttaagaccaaccgtgcggaactgtcgccttacgccccgcgaatgtataaattaaagatt
gatcagggcaagatcggcgccgtcattggtccgggtggccgcgttatccgtaacatcatt
gaagaaaccaaaaccaccattgatattgaagacgacggcacggtcatcattggtgccacc
gatggtgaatcggctaaacgcgctatatccatgattgaaggactgaccaaggatgttgaa
gcaggcaccgtctacaccggcaaggtgacccgtgtaatgagtttcggtgccttcgttgaa
attttaccgggtaaagaaggcttggttcatatttcagaacttgccaatcaccgtgttgag
aaagttgaagatgttctcaagaacggtgacaccgttaccgttaaggtaaccgagatagat
tctcagggccggatcaacctgtctatccgcgccctgctggcaccgccgaccgcagaagag
caagaagctatgcgcaatcaaggcccaccacagggaggtttccggcgctccggtccgggg
gcacccctgaatcaaggtgatcggcctccatttaggcggtaa
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