Defluviicoccus sp. SSA4: HWD60_04610
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Entry
HWD60_04610 CDS
T06717
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
dex
Defluviicoccus sp. SSA4
Brite
KEGG Orthology (KO) [BR:
dex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dex03016
]
HWD60_04610 (truB)
Enzymes [BR:
dex01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
HWD60_04610 (truB)
Transfer RNA biogenesis [BR:
dex03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
HWD60_04610 (truB)
Prokaryotic type
HWD60_04610 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
TruB_C
DUF4945
Motif
Other DBs
NCBI-ProteinID:
QLH40922
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All DBs
Position
941546..942505
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AA seq
319 aa
AA seq
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MCPAIRKRDNRVRAGTKRRDVHGWLIIDKPAGLTSAAVVSRVRRATGAAKAGHGGTLDPL
ATGLLPLALGEATKTVSYVVDGKKTYRFTVRWGELRNTDDAEGEVIGISDIRPDAAAITS
ILPQFCGEISQVPPMFSAIKVXGERAYALARAERPVDLPARTVYVDRFTLIECSDEDHAT
FEVVSGKGVYMRALARDVARALGTLGHVVALRRLSVGPFGEQHAISLDKVEAIGHNSELQ
TYLLPVGLALAGIPALVLTEAEAKRLQHGRSISVLPVASRSPLTEVARDTVICAVDGGKP
VALAQIKGGEIHPLRILNL
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgtgcccagcgataagaaaaagggataatcgggtgagagcaggaacaaagcgtcgcgac
gttcatggctggttgatcatcgacaagcccgctggcctgacgtcggctgcagtcgtcagc
cgggttcgacgcgcgacgggcgccgcaaaggctggtcacggnggtacncttgatccactg
gcgaccgggctgcttccgcttgctctcggagaagcgacgaaaacagtcagttatgtcgtt
gacggcaagaagacctatcgattcacggttcgctggggagagttgcgcaacaccgacgac
gctgaaggcgaggtgattggtatcagcgacatacggccggatgcagccgcaattacttct
attctgcctcagttctgcggtgagatcagtcaggttccacccatgttttcggcgattaaa
gtgnngggagagcgtgcctatgccctcgcgcgggccgagcgaccggtcgatctgcctgca
cgcacggtctatgtcgatcgatttacactcatcgagtgttcggacgaggatcacgcaacg
ttcgaggtggtgtctggtaagggtgtttacatgcgggcactggcgcgcgatgtggcgcgc
gcgctcgggactctcggacatgtggttgcactgcgccggctctcagtgggcccatttgga
gaacagcacgcgatatccctggataaggtggaggcaatcgggcataattctgagctgcaa
acctatctgcttccggtgggattggcgctggccggcatcccggcgctggttcttaccgag
gccgaggcgaaacgcctccagcacgggcgctccatctcggtgctccccgtggcaagccgg
tctccccttaccgaggttgcaagggacaccgtgatctgcgcggtngacgggggaaagccg
gttgcgttggcacagatcaagggtggggaaattcacccgctgcgcatattaaatctctga
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