Defluviicoccus sp. SSA4: HWD60_04620
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Entry
HWD60_04620 CDS
T06717
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dex
Defluviicoccus sp. SSA4
Pathway
dex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HWD60_04620 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dex03019
]
HWD60_04620 (pnp)
03016 Transfer RNA biogenesis [BR:
dex03016
]
HWD60_04620 (pnp)
Enzymes [BR:
dex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HWD60_04620 (pnp)
Messenger RNA biogenesis [BR:
dex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HWD60_04620 (pnp)
Transfer RNA biogenesis [BR:
dex03016
]
Prokaryotic type
tRNA degradation factors
HWD60_04620 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
QLH38381
LinkDB
All DBs
Position
942877..945021
Genome browser
AA seq
714 aa
AA seq
DB search
MLKEFRKEIVWGGRPLILESGKIARQADGAVMVTLGETKVLCTVVYEKTPKAGLDFFPLS
VHYQEKXFAAGKIPGGFFKREGRPAEREILTSRLIDRPIRPLFAKGYRNETQIICTVLSH
DLENDPDIASLIGASAALTLSGVPFLGPVAGCRVGYINGEYVLNPRLDELSSTSLDLVVA
GTREGVLMVESEAKELSEEIMLGAVMFGHQSFQPVIDAIIQLAEACAREPLELPPPSPGA
DALASRVRELAEGDLGDAYSEMAKAARRDKVAAVKERVQSALASDESLDAGLLFERFEEI
FKGVEKDVVRRRIVADGQRIDGRDTRTVRPIAVEVGLLPRAHGSALFTRGETQALVVTTL
GTGQDEQIVDALAGEYREHFMLHYNFPPYSVGEAGRFGFTGRREVGHGKLAWRAVRALLP
XKAAFPYTIRVVSEITESNGSSSMATVCGASLSLMDAGVPLPRPVAGIAMGLIKEPDAFV
VLSDILGDEDHLGDMDFKVAGTDQGVTALQMDIKITSITEAIMRTALEQAREGREHILSE
MAKGISSAREGLSEKAPRITVIHINKEKIREVIGPGGKIIREICEVTGARVDLEDDGTVK
VAAVDQQAADAAIEWIRSIAAEPEVGIIYSGKVVKTVDFGAFVNFLGNRDGLVHISELAR
ERVGKVTDVVKVGDIVKVKLIGIDDRGKIKLSMRVVDQQTGQDLTDTAQTAKAG
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgctaaaagagtttcgtaaggagatcgtctggggtgggcgtcccctgattctcgaaagt
ggtaagatcgctcggcaagccgatggcgcagtcatggtaacgctcggcgaaaccaaggtg
ctctgcacggtcgtgtatgagaagacgcccaaggccggactcgacttctttcccttgtct
gttcattaccaggaaaagnnctttgccgccggcaagataccgggcggctttttcaagcgt
gagggccgtccagcagaacgcgagattctgacgtcgcggctgatcgatcgcccgatccgt
ccgctgttcgccaagggctatcggaacgaaacgcagatcatctgcacggttctcagccac
gaccttgaaaacgatccggacattgcatcgctgatcggtgcgtcggcggcactgacgctt
tccggtgttcccttccttgggccggtggccggctgtcgcgttggctatatcaacggcgaa
tatgtcctcaatccccggcttgatgagctgtcaagcacctctcttgacctggttgtggcg
ggaacgcgcgaaggcgtgctgatggttgaatcggaagcaaaggagctgtccgaagagatc
atgctgggggcggtgatgttcggacatcaaagcttccagccggtcatcgacgcgattatc
caactggcggaagcgtgtgcgcgggagccgctggagctgccgccgccgtctccaggtgcg
gatgccttggcatcgcgggtgcgggaactcgccgaaggtgatctgggcgacgcgtattca
gagatggctaaggccgcccgccgcgacaaggtggctgcggtgaaggagcgcgtgcagtct
gcccttgcgagcgacgagtcgcttgatgcgggtctgttgtttgagcggttcgaggagata
ttcaagggcgttgaaaaggacgtcgtgcgacggcggatcgtcgccgatggtcaacgcatc
gacgggagagacacgcgtaccgtccggccgattgcggtcgaggtcggactgctnccccgg
gctcacggtagcgcgctgtttacgcgtggcgagacgcaggcactggtggtgacgacgctt
ggcaccgggcaggacgaacagatcgtcgatgcgcttgccggcgaatatcgcgaacacttc
atgctgcactacaattttccgccctattcggtcggtgaagcggggcgcttcggctttacg
ggacgtcgcgaggttgggcacggcaaactcgcctggcgtgcggttcgcgcgctgcttccg
nngaaagcagcctttccgtataccatccgcgtggtttcggagatcaccgagtcgaacggc
tcgtcgtcgatggctacggtgtgcggngcgtcgctgtcgctcatggatgcnggtgtcccc
ttgccccggccggttgccggtattgcgatggggttgatcaaggagccggacgcgtttgtc
gtcctttccgacatcctgggtgatgaagaccatcttggtgacatggacttcaaggtcgct
ggaaccgaccagggcgtgaccgcgttgcagatggatatcaagattacgtcgatcactgaa
gcaatcatgcgcacggcgctggagcaggctcgcgaagggcgagagcatatcttgtcggaa
atggccaaggggatctcatctgcccgcgaggggctgagtgaaaaggcgccacgaatcacc
gtcattcatatcaacaaggaaaaaattcgagaggttatcggaccgggtggcaagatcatc
cgagagatctgcgaagtgaccggggcgcgcgtcgacctggaagatgatggcacggtcaag
gtggcggcggtcgatcagcaggctgcggacgcggcaatcgagtggatccgctcgattgcg
gcagaaccggaagtcggcatcatctactccggcaaggtcgtcaagaccgtggattttggt
gcctttgtgaactttcttggcaaccgggatggcttggtgcacatcagcgagcttgcccgc
gaaagggtggggaaggtcacggatgtggtgaaggttggcgatatcgtgaaagtgaagctg
atcggcatcgatgatcggggcaagatcaagctgtcgatgcgtgtggttgatcagcagaca
ggccaagacctcaccgacactgcacagacggcaaaggccggctga
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