Dechloromonas sp. HYN0024: HYN24_01565
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Entry
HYN24_01565 CDS
T05616
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dey
Dechloromonas sp. HYN0024
Pathway
dey03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dey00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HYN24_01565 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dey03021
]
HYN24_01565 (rpoC)
03400 DNA repair and recombination proteins [BR:
dey03400
]
HYN24_01565 (rpoC)
Enzymes [BR:
dey01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HYN24_01565 (rpoC)
Transcription machinery [BR:
dey03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HYN24_01565 (rpoC)
DNA repair and recombination proteins [BR:
dey03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HYN24_01565 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
DUF6342
Motif
Other DBs
NCBI-ProteinID:
AXS78831
LinkDB
All DBs
Position
322359..326573
Genome browser
AA seq
1404 aa
AA seq
DB search
MKALLDLFKQVTAEEEFDAITIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRDRMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMVSNLQRAQLLTEEQYLEMMEEHGDEFVAF
MGAEGIRELLRNLDLNTEVESLRAELEVTGSEAKNKKLAKRLKILEGFQKSGIKPDWMIL
EVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRML
QESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGP
QLKLHQCGLPKLMALELFKPFIFHKLEVLGYATTIKQAKKMVEGQEPVVWDILEDVIREH
PVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQME
ARTLMLASNNVLSPANGQPIIVPSQDIVLGLYYATREKINGKGEGMYFADTNEIERAMAA
GQLDVHSRISVRLKQYEPAAADGEFVEKLVRVETTAGRALLSKILPKGLPFKSIDRALKK
KEISKLIDESFRRCGLKETVVFADKLMQNGYALATRAGISFCSDDMRVPAKKYEIIASAE
AEVKEIETQYTNGLVTNGERYNKVVDIWGRTGDQVAKVMMDELGHEETVDRHGKKVKQDS
FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITTNFREGLNVLQYFISTHG
ARKGLADTALKTANSGYLTRRLVDVTQDLVITEDDCGTRNGFVVKALVEGGEVIEALRER
ILGRVVVDDLVDPETQESIIFAGTMLDEDLVDLIDKLGIDEVKVRTPLTCDTRYGLCAQC
YGRDLGRGTMVNAGEAVGVIAAQSIGEPGTQLTMRTFHVGGAASRAAVADKVEGKSAGTV
RYTSNMRYVTSAKGEKVVISRSGEVLIVDDHGRERERHKVPYGAMLSVDEGKAVKAGTKL
ATWDPHTRPIITEYAGTARFENVEEGVTVAKQVDDVTGLSTLVVIDNKRGGKAAVKGLRP
VVKLLDENGQEVRVAGSDHTVSIAFQVGSIISVLDGQQVGVGDVLARMPQESAKTRDITG
GLPRVAELFEARTPKDASVLAEYTGTIGFGKDTKGKQRLIITDLDGTAHEYLIPKDKHVL
VHDGQVVNKGEKIVEGEPDPHDILRLQGVEALARYITDEVQDVYRLQGVKINDKHIEVIV
RQMLRRVAITEPGDTKFIKSEQVERAELLAENDRAIADGKIPANFDHMLLGITKASLSTD
SFISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHRSRKAQVASEE
LAAAAVPVAEAVVENATQGSELDQ
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattgctcgatctattcaagcaggtaaccgccgaagaggaatttgacgcgatt
accattggtctcgcctcgcccgaaaagatccgttcctggtcctacggtgaagtcaagaag
ccggaaaccatcaactaccgtaccttcaagccggagcgcgatggtctgttctgcgccaag
atctttggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcat
cgcggcgtgatctgcgagaagtgcggcgttgaagtgacgctggccaaggttcgtcgcgac
cgcatgggtcacatcgaactggcctcgccgaccgcccacatctggttcctcaagtccctg
ccgtcgcgtcttggcatggtcctcgacatgaccctgcgtgacatcgaacgcgtgctgtat
ttcgaagcctacgtcgtcaccgatccgggcatggtcagcaacctccagcgcgcccagttg
ctcaccgaagagcagtatctggaaatgatggaagagcacggcgacgagtttgtggccttc
atgggcgccgaaggcatccgtgaactgctgcgcaacctcgacctcaatactgaagtcgaa
tccctgcgcgccgaactcgaagtgaccggctcggaagccaaaaacaagaagctggccaag
cgtttgaagattctcgaaggtttccagaagtccggcatcaagccggactggatgatcctc
gaagtcctgcccgtcctgccgcctgacctgcgtccgctcgtcccgctcgacggtggccgt
ttcgccacctccgacctgaacgacctctaccgtcgcgtcatcaaccggaacaaccgtctc
aagcgcctgctcgaactgaaggcgccggaaatcatcgtgcgcaacgaaaagcgcatgctg
caggaatcggttgactcgctgctcgacaacggtcgtcgcggcaaggccatgaccggcgcc
aacaagcgtcccctcaagtccctggccgacatgatcaagggcaagggcggtcgtttccgt
cagaatctgctcggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggtccg
cagctcaagctgcaccagtgcggcctgcccaagctcatggcgctcgaactgttcaagccc
ttcatcttccacaagctcgaagtgctcggctacgccaccaccatcaagcaagccaagaag
atggtcgaaggccaggaaccggtcgtttgggacatcctcgaagatgtcatccgcgaacat
ccggtcatgcttaaccgcgcgccgaccctgcaccgtcttggtattcaggcgtttgaaccg
accctgatcgaaggcaaggccatccagttgcaccccctcgtttgcgcggccttcaacgcc
gacttcgacggtgaccagatggctgtccacgtcccgctctcgctcgaagcgcagatggaa
gcccgcaccctgatgctggcctccaacaacgtgctgtcgccggccaacggccagccgatc
atcgtgccgtcgcaggacatcgtgctgggtctgtactacgccacccgcgaaaagatcaac
ggcaagggcgagggcatgtacttcgccgacaccaacgagatcgaacgcgccatggcggct
ggtcagcttgacgtgcactcccggatttccgtccgtctcaagcagtacgagccggcggct
gccgatggcgagttcgttgaaaagctggtccgtgtcgaaaccacggctggtcgcgccctg
ctctcgaaaattctgccgaagggcctgccgttcaagtcgatcgaccgcgccctgaagaag
aaagaaatctccaagctgattgacgaatccttccgtcgctgcggcctgaaggaaacggtt
gtcttcgccgacaagctgatgcagaacggttacgccctggctacccgcgccggcatctcc
ttctgctctgacgacatgcgcgtcccggccaagaaatacgagatcatcgcctcggccgaa
gccgaagtgaaagagatcgaaacccagtacaccaacggtctggtgaccaacggcgaacgc
tataacaaggtcgtcgatatctggggccgtaccggcgatcaggttgccaaggtcatgatg
gacgaactcggccacgaagaaacggtcgatcgtcacggcaagaaggtcaagcaggactcc
ttcaactcgatctacatgatggccgactccggcgctcgcggttccgctgcccagattcgt
cagctggctggtatgcgcggcctgatggccaagccggatggctcgattatcgagacgccg
attaccaccaacttccgcgaaggtctgaacgttctccagtacttcatctcgacgcacggt
gcccgtaagggtctggccgatacggcgttgaagacggcgaactcgggttacctgacgcgt
cgtctggtcgacgtgacgcaggatctggtcattaccgaagatgactgcggtacccgcaac
ggttttgtcgtcaaggccctggtcgaaggcggcgaagtcatcgaagccctgcgcgagcgt
attctcggtcgcgtcgtggtcgatgatctggtcgatccggaaacccaggaatcgatcatc
ttcgctggcaccatgctggacgaggatctggtcgatctgatcgacaagctgggtatcgac
gaagtcaaggttcgcaccccgctgacctgtgatacccgctacggcctgtgcgcccagtgt
tatggtcgtgacctcggtcgcggcaccatggtcaacgccggtgaggcagtcggtgtgatc
gcggcccagtcgattggtgagccgggtacccagctcaccatgcggaccttccacgtcggt
ggcgcggcttcccgggcggctgtcgctgacaaggtcgaaggcaagtctgccggtaccgtg
cgctacacctccaatatgcgctatgtcaccagcgccaagggcgagaaggtcgttatttcg
cgctccggcgaagtgctgatcgttgatgatcatggtcgcgagcgtgaacgccacaaggtg
ccctacggcgccatgctgtcggtcgatgaaggcaaggccgtcaaggccggtaccaagctg
gccacctgggatccgcatacccgtccgatcattaccgaatacgctggtaccgctcgcttc
gagaatgtcgaagaaggcgtcaccgttgccaagcaggtcgatgatgtgacaggcctctcc
acgctcgtcgtcatcgacaacaagcgcggcggcaaggctgccgtcaagggtctgcgcccg
gtcgtcaagttgcttgacgaaaacggtcaggaagtccgtgtcgctggtagcgaccacacc
gtctccatcgccttccaggttggctcgatcatttccgtgctcgacggccagcaggtcggt
gttggcgatgtgctggcccgtatgccgcaagaatctgccaagacgcgcgacattaccggc
ggtctgccgcgggttgccgagctgttcgaagcccgcactccgaaggatgcctccgtgctc
gccgagtacaccggcaccatcggtttcggcaaggatacgaagggcaagcagcgtctgatc
attaccgatctcgacggcaccgctcacgagtacctgattcccaaggacaagcatgttctg
gtgcacgatggccaggtcgtcaacaagggcgagaagatcgtcgaaggcgaaccggatccg
cacgatatcctgcgtctgcagggcgtcgaggcgctggcccgctacatcactgacgaagtt
caggacgtttatcgtctgcagggcgtcaagatcaacgacaagcacattgaagtgatcgtc
cgtcagatgctgcgtcgcgtcgccattaccgaaccgggtgatacgaagttcatcaagtcc
gaacaggtcgaacgtgccgaattgctggccgaaaatgaccgggcgattgccgatggcaag
attccggccaatttcgaccacatgctgctcggtatcaccaaggcttcgttgtccaccgat
tcgttcatctcggccgcttccttccaggaaacgacgcgggttctcaccgaggctgccatc
atgggcaagcgcgacgaactgcgtggtctcaaggaaaacgtcattgtcggccgtctcatc
ccggccggtaccggcttggcttatcaccgcagccgcaaggcccaggtggcgagcgaagaa
ctcgcggcagccgctgttccggtagccgaagctgtggtagaaaacgcaacgcaaggcagc
gagctggaccagtaa
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integrated database retrieval system
