Dechloromonas sp. HYN0024: HYN24_02235
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Entry
HYN24_02235 CDS
T05616
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
dey
Dechloromonas sp. HYN0024
Pathway
dey02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dey00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HYN24_02235 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dey03021
]
HYN24_02235 (rpoD)
Transcription machinery [BR:
dey03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HYN24_02235 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
Motif
Other DBs
NCBI-ProteinID:
AXS78954
LinkDB
All DBs
Position
complement(451072..453054)
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AA seq
660 aa
AA seq
DB search
MFMAKAKDPVKEAPKARTSKAKEKAAEKALLQGQMAETPEPLDAEARKMRLKALIKLGKE
RGYLTYAEINDHLPDDVVDAESIEAIISTFSEMSIQVFDEAPAAEDLLMSDTAAVAADDE
EVEAQAEQALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGLKHMIQAI
SACPTTITDILDMAAKVETDEMRIDELVDGLIDPNATEVVAAAPEMPEAEEEDEDDEGED
EEGGAAGAASASLLQLKTDALERFKTIKGIHAKMQKLLSSKGPHDKAYLKLQQQISDELL
NIRFTSRSIERLCDSVRGMVEQVRGSERKIQQICVERVKMPRPHFIQSFPGKETTLEWVD
GEIAAAPKTYLAILTRCAPDIKEEQKKLIALQDRIGIPLKDLKDINKQMSTGEAKARRAK
REMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR
QAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGLEPDPATLAKKMDMPEDKIRK
IMKISKEPISMETPIGDDDDSHLGDFIEDQLTLAPADAAMYSSLRGVTKEILDTLTTREA
KVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDKLRSFLDQNGN
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
gtgttcatggctaaggcaaaagaccccgtcaaggaagccccgaaggctcgcaccagcaag
gccaaggaaaaggcagccgaaaaggcgctactgcaaggccagatggcagaaacgccggaa
ccccttgatgccgaagcgcgcaagatgcgtctcaaggccctgatcaagctgggcaaggag
cgtggctacctgacctacgccgaaatcaacgaccacctgccggacgacgtcgtcgacgcg
gaaagtatcgaagcgatcatttccaccttcagcgaaatgagcatccaggttttcgacgaa
gccccggctgccgaagacctgctgatgtcggacaccgccgccgttgccgccgacgacgaa
gaagtcgaagcgcaggccgagcaggcgctgtccaccgtcgactccgaatttggccggacg
accgacccggtgcgcatgtacatgcgcgaaatgggcacggttgaactcctcacccgcgaa
ggcgaaatcgagatcgccaagcgtatcgaggaaggcctgaagcacatgatccaggcgatc
tccgcctgcccgacgacgatcaccgacatcctcgacatggccgccaaggtcgagactgac
gaaatgcgcatcgacgaactggtcgacggcctgatcgatccgaacgccaccgaagtggtt
gccgccgccccggaaatgccggaagccgaggaagaggacgaggatgacgagggcgaagat
gaagagggtggcgctgccggcgcagcctccgcttcgctgctccaacttaagaccgacgcc
ctggagcgcttcaagaccatcaagggcattcatgccaagatgcagaagctgctctcaagc
aagggtccgcacgacaaggcctacctcaagctgcaacagcagatttccgacgagctgctc
aatattcgcttcacctcgcgctccatcgagcgcctgtgcgacagcgtacgtggcatggtc
gaacaggtccgtggctccgagcgcaagattcagcaaatctgtgtcgaacgcgtcaagatg
ccgcgtccgcacttcatccagtccttccccggcaaggaaacgacgctggaatgggtcgat
ggcgaaatcgccgccgcgcccaagacctacctcgccatcctgacccgctgcgcgccggac
atcaaggaagagcagaagaagctgatcgccctccaggatcgcatcggcattccgctcaag
gatctcaaggacatcaacaagcagatgtcgaccggcgaagccaaggcccgtcgcgccaaa
cgcgaaatgaccgaagccaacctgcgtctcgtcatctccatcgccaagaaatacaccaac
cgcggcctgcagttcctcgacctcatccaggaaggcaacatcggcctcatgaaggccgtg
gacaagttcgaataccgccgtggctacaagttctccacctacgccacgtggtggatccgt
caggccatcacccgctccatcgccgaccaggcgcggaccatccgcatcccggttcacatg
atcgaaacgatcaacaagatgaaccggatcagccgccagatcctgcaggaaaccggcctc
gagccggatcccgccaccctggccaagaagatggacatgccggaagacaagatccgcaag
atcatgaagatttccaaggagccgatctccatggaaaccccgatcggcgacgacgacgac
tctcacctcggcgacttcattgaagaccagctcaccctggccccggccgatgccgccatg
tactccagcctgcgcggcgtcacaaaggaaattctcgacaccctgacgacgagggaagcc
aaggtcctgcgcatgcgcttcggtatcgaaatgaacaccgatcacacgctggaagaagtc
ggcaagcagttcgacgtcacccgcgagcgcattcgacagatagaagccaaggcgctgcgc
aagctgcgtcacccgacacgctccgacaagctgcgcagcttcctggaccagaacggcaac
taa
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