Dechloromonas sp. HYN0024: HYN24_03895
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Entry
HYN24_03895 CDS
T05616
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
dey
Dechloromonas sp. HYN0024
Brite
KEGG Orthology (KO) [BR:
dey00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dey03009
]
HYN24_03895 (rlmD)
Enzymes [BR:
dey01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HYN24_03895 (rlmD)
Ribosome biogenesis [BR:
dey03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HYN24_03895 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_25
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_15
TRAM
Methyltransf_11
CMAS
Methyltransf_23
MTS
Methyltrans_SAM
RrnaAD
Motif
Other DBs
NCBI-ProteinID:
AXS79245
UniProt:
A0A3B7AAE4
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All DBs
Position
801524..802822
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AA seq
432 aa
AA seq
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MPIGIIASLDHEARGITRQEGKAIFVDGALPGETVEYASFRRKSKFELAHLVRVIKASNA
RVAPRCPHFGVCGGCAMQHMDPSAQVAAKQRVLEDSLWHIGRVRPETMLPPIQGEPWGYR
HRARLAVRQVAKGGPVLIGFHEWRSSYIADIRSCDILPPHVSALLMPMRELFAKLTVAGQ
IREVEVAVGEHCTAVLLRILESLTAADERLLRAFAEHHEIVVYLQPKGPDSICRFHPLPG
PRLSYTLPEFNLEFDFKPSDFTQVNHAVNRVLVRRALRLLDPQPGERIADMFCGLGNFTL
PIARSGALVVGVEGSAGLVARGKESAVANGLADRVEYGVANLFECTEQSLSKLGHFDKML
IDPPREGAVELVRALGHDAPGRIVYVSCNPGTLARDAAVLVAEKGYRFVSAGAVNMFPHT
AHVESIAVFERT
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
gtgcctatcgggatcatcgcatcgctggaccatgaggcacggggaattacccgtcaggag
ggcaaagccatttttgttgatggtgccttgccgggagaaaccgtcgaatacgccagtttc
cgccgaaagtccaagttcgagctggctcacctggttcgcgtcatcaaggcgtcgaatgcc
cgcgttgcgccgcgctgcccccactttggtgtttgtggcgggtgtgccatgcagcacatg
gacccttcggcgcaggtcgccgccaagcagcgggttctcgaagacagtctctggcacatc
ggtcgggttcgtcccgaaaccatgctgccgccgatccagggggagccctgggggtatcgt
caccgggcccgtctggccgtgcggcaggtggccaagggtggtccggtgctgatcggcttc
catgagtggcggagcagctatattgccgatatccgcagctgcgacatcctgccgccgcat
gtgtcggccttgctcatgccgatgcgcgaactctttgccaaattgacggtggctggtcag
attcgcgaggtcgaggtggccgttggcgagcactgcacggccgtactgctacgcatcctt
gagtcactgacggcggccgatgagcgcttgttgcgtgcctttgccgagcatcacgagatt
gtcgtctacctgcagcccaaggggccggactctatttgtcgctttcacccgctgccgggg
ccacgtttgtcctatacgctgcctgagttcaacctcgagttcgatttcaaacccagcgat
tttactcaggttaatcatgcggttaatcgggttctggtccgtcgtgccttgcgcctgctt
gacccgcaaccgggtgagcggatcgccgacatgttctgtgggctgggcaatttcaccttg
cccatcgcccgctctggtgccctggtcgttggtgtcgaaggcagtgccgggctggtggcg
cgcggcaaagaaagcgctgtggcgaacggcctggccgatcgtgtcgagtacggtgttgcc
aacctctttgaatgcacggagcagtcactgtccaagctcggccacttcgacaagatgctg
atcgacccgccacgcgagggggcggtcgaactggtcagggcgctcggccatgatgcgccg
ggccgcatcgtatacgtttcctgcaatcctggtacgttggcccgtgatgcggcagtgctg
gtcgccgaaaagggctatcgtttcgtctcggccggggccgtcaacatgttcccgcatacg
gcccacgttgagtcgatcgccgtttttgaacggacctga
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