Dechloromonas sp. HYN0024: HYN24_05380
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Entry
HYN24_05380 CDS
T05616
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dey
Dechloromonas sp. HYN0024
Pathway
dey03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dey00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYN24_05380 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dey03019
]
HYN24_05380 (rnr)
03016 Transfer RNA biogenesis [BR:
dey03016
]
HYN24_05380 (rnr)
Enzymes [BR:
dey01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HYN24_05380 (rnr)
Messenger RNA biogenesis [BR:
dey03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HYN24_05380 (rnr)
Transfer RNA biogenesis [BR:
dey03016
]
Prokaryotic type
tRNA degradation factors
HYN24_05380 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
CSD
DUF8214
Motif
Other DBs
NCBI-ProteinID:
AXS79502
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All DBs
Position
1123892..1126351
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AA seq
819 aa
AA seq
DB search
MSRKKLSKVRRADPFFERELARYEFPLPSREYVTQVLTDEGRPIELAELIELLDITTTER
DMFQRRLGAMEREGQLMRNRKGAYILPERASLTAGRIQGHPDGYGFLIPDDGSADVFLDQ
HQMGKVLHGDRALVRVTGIDRKGRPEGGIVEVTERVNTRIVGRVFVEHGVVVVAPENKRI
SQDILVPPQPKAKNQPQSGQVVMVEIIEQPSKFSQPIGKIIEVLGNYADPGMEIEIALRK
HDLPFEFSPAALAENKALPDKVTKADLKGRVDLRDVALVTIDGETARDFDDAVYCEKKGR
GWRLVVAIADVSHYVRPGMALDREAVERGNSVYFPRRVIPMLPEKLSNGICSLNPDVERM
AMVCDMEISANGKIGKYKFYPAVFKSHARLTYNLVWSWLSGEKVPETEVHQGVLPHVQNL
YKLFAALHKARGQRGAIDFETTETQMLFNAQGKIENIVPVVRNDAHRIIEECMLAANVCA
SNFLAEHKQTCLYRIHAAPSEEKLANLRAFLGEFGLALGGGDNPQAKDYAILLEKVKPRP
DFQLLQTVMLRSLRQAMYSPDNVGHFGLAYEHYTHFTSPIRRYPDLLVHRAIKAVLAKEV
YTPDRSWDDIGLQCSSTERRADEATRDVENWLKTFFMKERIGEEFDGTISGVTAFGIFVA
LDSVYIEGLVHVSELGADYFQFDNIKHQMLGERTGQRFRLGDRVRVKLVRADLESNRIDF
VMAGSDKAYAGPRTVPKAAVKAVGSRPQAKAAVSWDAAPKVPTKAGKSAAKPSFGKAEKP
AAKGKAKPAGKKSSAKKSAAPGSKVGGGKAAHKGGAKKR
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagaaaaaagctatcaaaagtccgtagggctgatcccttcttcgaacgcgaactg
gcacgctatgaatttccgctaccttcgcgtgaatatgtgacccaggttttgactgacgaa
gggcgtccgatcgagctggctgaactgatcgaattgctcgatatcaccactaccgagcgc
gatatgtttcaacgccggctcggcgccatggagcgcgaaggccaactcatgcgcaatcgc
aagggtgcctatatcctgcccgagcgggccagtctgacggcgggtcgtatccagggacac
ccggacggatatggtttcctgattcccgatgatggcagcgccgatgtctttctcgatcag
caccagatggggaaggtgctgcatggcgatcgggcgttggttcgcgtcaccggcattgac
cgcaaggggcgtcccgagggaggcatcgtcgaggtgaccgaacgggtcaatacacggatt
gtcggccgggttttcgtcgagcatggcgtcgttgtcgtggcccctgaaaacaagcgcatt
tcgcaggatattctggtgccgccgcagcccaaggcgaaaaatcagccgcagtccggacag
gtggtcatggtcgagatcatcgagcagccgagcaaattctcgcagccgatcggcaagatc
attgaggtgctcggcaactatgccgatccgggcatggaaatcgagattgcgttgcgcaag
cacgatctgcctttcgagttttccccggcggcactggcggaaaacaaggcgctgccggat
aaggtaaccaaggccgacctgaaaggtcgcgtcgatttgcgcgatgtcgcgctggttacc
atcgatggcgagacggcccgcgatttcgacgatgccgtctattgcgaaaagaagggccgg
ggctggcgcctggtcgtggctattgccgatgtctcgcattacgtcaggccgggcatggcg
ctcgaccgtgaggcggtggagcgcggcaattcggtctatttcccgcgccgggtcatcccc
atgctgccagagaaactatccaacggtatctgctcgctcaatcctgatgtcgagcggatg
gccatggtctgcgacatggaaatcagtgccaacggcaagatcgggaagtacaagttctat
ccggccgtcttcaagtcgcatgcacgcttgacctacaatctcgtctggtcctggctatcc
ggtgaaaaagtgccggaaaccgaggtgcatcagggggttttgccccatgtgcagaatctc
tacaagctgttcgccgccttgcacaaggcgcgcggccagcgcggcgcgatcgatttcgag
acgaccgaaacgcagatgctgttcaatgctcagggaaagatcgagaacatcgtcccggtg
gtccgcaacgatgctcaccggatcattgaggaatgcatgctggcggccaatgtctgcgcc
tcaaatttccttgccgagcacaagcagacctgcctttaccgcatccacgctgcgccgtcg
gaagaaaaactggccaacctgcgcgccttccttggcgagttcggcctcgccttgggcggt
ggcgacaatccccaggccaaggattacgccatcctgctcgagaaggtcaagccgcgtccg
gacttccagttgttgcagacggtcatgctgcgttcactgcgtcaggctatgtacagcccc
gacaacgtcggccacttcggcctggcctatgagcattacacccacttcacctcacccatc
cgccgctatcccgacctcctcgtgcatcgtgccatcaaagcggtgctggccaaggaggtc
tatacgccggatcgctcgtgggacgacatcggtctgcagtgttcgagcaccgaacgacgg
gccgacgaggcgacgcgggacgttgagaactggctgaagaccttcttcatgaaggagcgc
atcggcgaggaattcgacggcacgatttccggcgtcaccgccttcggtattttcgtcgcc
ctcgacagcgtctatatcgagggcctggtgcacgtctccgaactaggagccgattacttc
cagttcgacaacatcaagcatcagatgctcggcgaacggactggccagcgtttccgcctc
ggcgaccgggtccgcgtcaaactggtgcgggccgacctcgagtcgaaccgtatcgacttt
gtcatggctggtagcgacaaggcctatgccggtccgaggacggtgcctaaagctgcggtc
aaggcggttggttcgcgcccgcaggccaaggctgcggtgagttgggatgcggcgcccaag
gtgccaaccaaggccggaaagtcggctgccaagccatccttcggtaaggcggaaaagccg
gccgccaagggcaaagcgaaaccggcgggtaaaaaatcttcggccaagaagtcggctgca
ccaggcagcaaggtcggcggcggcaaggccgcccacaagggaggcgctaaaaagcgctga
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integrated database retrieval system
