Dechloromonas sp. HYN0024: HYN24_11965
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Entry
HYN24_11965 CDS
T05616
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dey
Dechloromonas sp. HYN0024
Pathway
dey03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dey00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYN24_11965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dey03019
]
HYN24_11965
Enzymes [BR:
dey01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HYN24_11965
Messenger RNA biogenesis [BR:
dey03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HYN24_11965
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AXS81533
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All DBs
Position
2498293..2499774
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AA seq
493 aa
AA seq
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MTFADLGLAPELLRAVLDEGYTKPTPIQAQAIPLVISGKDIMGGAQTGTGKTAAFTLPIL
QRILPFASSSPSPAKHPVRALILAPTRELAMQVFESVKTYSKHTPIRAMCAFGGVDIKPQ
IAELKKGVEILVATPGRLLDHVENKSVSFNSVQALVLDEADRMLDMGFVPDVTRILNMLP
AQRQSLLFSATFSEEIKKLADSMLKSPILIEVARRNQVSDTITHRVHPVSEYGKRGLLTK
LLKSGEIRQCIVFCRTKQGCSRLTRELQRAGIKADAIHGDKSQLERIKALEAFKGGETDA
LIATDVAARGLDVDDLPYVINYELPHTPEDYVHRIGRTGRAGKMGNAISLVSAREVVYLV
DIEKLIKRPIEQIEVAGFEPEPEYEYPLGNKRKRSAPVVAPTAQRPERSERPERSERPER
SDRSARPERNDRQDRRPPRRNPMIAADGFDFSKPYEDNSPRGDVPDSPTAPAKVDPHKPK
RVVAALLGGLGRK
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atcaccttcgccgacctcggcctggcgcccgaacttctgcgtgccgtcctcgatgaaggc
tacaccaagccgacgccgatccaggcccaggccatccccctcgtcatcagcggcaaggac
atcatgggcggcgcccagaccggcaccggcaagacggccgcgttcaccctgcccatcctc
cagcgcatcctgccctttgccagcagcagcccgtcgccggccaagcacccggtacgcgcc
ctgatcctcgccccaacccgcgaactggccatgcaggtcttcgagtcggtcaagacctac
agcaagcacacaccgatccgcgccatgtgcgccttcggcggcgtcgacatcaagccgcag
atcgccgaactcaagaaaggcgtcgaaatcctcgtcgccacgccgggccgcctgctcgat
cacgtcgaaaacaagagtgtcagctttaattccgtccaggccctcgtcctcgatgaagcc
gaccgcatgctcgacatgggcttcgtgcctgacgtcacgcgcatcctcaacatgctgccg
gcgcagcgccagagcctgcttttttcggccaccttctcggaagaaatcaagaagctggcc
gatagcatgttgaagtcgccgatcctgatcgaagtcgcccgccgcaaccaggtctcggac
accattactcaccgcgtccacccggtctccgaatacggcaagcgcggcctgctcaccaag
ctgctgaaatccggcgaaatccgtcagtgcatcgtcttctgtcgcaccaagcagggttgc
tcgcgcctgacccgagaactccaacgtgccggcatcaaggccgacgccattcacggcgac
aagagccagcttgaacgcatcaaggcactcgaggcgttcaagggcggcgagaccgacgcc
ctcatcgccactgacgtcgccgcccgtggtctcgacgttgatgatctgccctacgtcatc
aactacgaactgccgcacaccccggaagactacgtgcaccgcatcggccgtaccggccgc
gctggcaagatgggcaatgccatctcgctggtcagcgcacgcgaagttgtctatctggtc
gatatcgaaaagctcatcaaacggccgatcgaacagatcgaggtggccgggttcgaaccc
gaaccggaatatgaatatccgctcggcaacaagagaaagcgcagcgccccggtagtcgcc
ccgaccgcccagcgccccgaacgcagtgagcgtccagaacgatcagaacgccccgagcgt
agcgaccgctcggctcgaccggaacgcaatgaccggcaggatcgccgaccaccccggcgc
aacccgatgatcgccgccgacggttttgacttcagcaagccctacgaagacaactcacca
cgcggcgatgtaccggattcaccgacggccccggccaaggtggacccgcataagccgaaa
cgggttgttgcggccttgctcggtggtctcggacgcaagtaa
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