Deinococcus irradiatisoli: DKM44_01110
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Entry
DKM44_01110 CDS
T05530
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dez
Deinococcus irradiatisoli
Brite
KEGG Orthology (KO) [BR:
dez00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dez03016
]
DKM44_01110
Enzymes [BR:
dez01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DKM44_01110
Transfer RNA biogenesis [BR:
dez03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DKM44_01110
Prokaryotic type
tRNA splicing ligases
DKM44_01110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AWN22005
UniProt:
A0A2Z3JAI5
LinkDB
All DBs
Position
224517..225920
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AA seq
467 aa
AA seq
DB search
MNGKHISKLGLNPKAAALALNVARRQEDLGTSRRDILDALSQVKADPEAYLESDYAELAR
ELLAQTCSQVQRQAGSALRPAPLPYAEFGSALIEPGARSQMDVAMRLPVARAGALMPDAH
VGYGLPIGGVLAAENAVIPYGVGVDIGCSMQLSVFGTRPEQLPTAEALSLLRRHTRFGAG
VGFERRERLDHPVLDDPAWSEQPLLRHLHDKAAEQIGTSGSGNHFVEFGTFTLQAPEEGL
ETGTYLALLSHSGSRGFGAQVAGHFTKLAEQRHAALDPAARKLAWLPLDSDEGAAYWQAM
TLAGHYALANHQQIHARISRALNEAPLLSVRNSHNLAWKEPLEDSELIVHRKGATPAAAG
QLGLIPGSMADPAYLVRGRGYAPALASASHGAGRQLGRNAARAALSKTEVADYLAQRGVT
LLGGGIDEAPQAYKRIEDVMAAQSDLVDVLGEFMPKVVRMDSGGQDI
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcaaacacatctccaaactcggtttgaaccccaaagcggcggcgttggccctg
aacgttgcccggcgtcaggaagacctgggcacttcccgccgcgacattctggacgcgctc
tcgcaggtcaaggccgaccccgaggcgtacctggagagcgactacgccgaactggcccgc
gaactgctggcccagacctgcagccaggtacagcgtcaggccgggtcggccctgcgcccg
gccccgctgccgtacgccgagttcggttcggcgctgattgagccgggtgcccgcagccag
atggacgtcgccatgcgcttgccggtggcccgcgccggcgcgctgatgcccgacgcccac
gtcggctacggcctgccgatcggcggggtgctggccgccgagaacgcggtgattccctat
ggggtgggtgtggacatcggctgctcgatgcagctctcggtgttcggtacccggccggaa
cagctccccaccgccgaggccctgagtctgctgcgccgccacacccgcttcggggccggg
gtgggcttcgagcgccgcgagcgcctcgaccatccggtgctcgacgacccggcctggagc
gaacagccgctgctgcgccacctgcacgacaaggccgccgagcagatcggcacctctggc
agcggcaaccatttcgtggagttcggcactttcacgcttcaggcgccggaagaaggtctg
gaaaccggcacctacctggcgctgctctcgcacagcggctcacgcggcttcggcgcgcag
gtggccggccacttcaccaagctggccgagcagcgccacgcggccctcgaccccgccgcc
cgcaagctggcctggctgccgctggacagcgacgagggggcggcgtactggcaggccatg
accctggcgggccactacgcgctggccaaccaccagcagattcacgctcgcatctcccgc
gccctgaacgaggcgccgctgctgagcgtgcgcaacagccacaacctggcctggaaggag
ccgctggaggacagtgagctgatcgtgcaccgcaagggcgccacgcccgccgctgcgggg
cagctgggcctgattcccggcagcatggccgacccggcgtatctggtgcgcgggcgcggg
tacgccccggccctggcgagcgcctcgcacggcgcggggcggcagctggggcgcaacgcg
gcccgcgcggcgctcagcaaaaccgaggtcgccgactacctcgcgcagcgaggcgtgacc
ttgctgggcggcggcatcgacgaagcgccgcaggcctacaagcgcatcgaggacgtgatg
gccgcccagagcgacctggtggacgtgctgggcgagttcatgccgaaggtggtccggatg
gacagcggcggccaggacatctga
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