Deinococcus irradiatisoli: DKM44_02680
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Entry
DKM44_02680 CDS
T05530
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dez
Deinococcus irradiatisoli
Pathway
dez03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dez00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DKM44_02680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dez03019
]
DKM44_02680
Enzymes [BR:
dez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DKM44_02680
Messenger RNA biogenesis [BR:
dez03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DKM44_02680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Flavi_DEAD
P-loop_SecA
AAA_22
NgoMIV_restric
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AWN22275
UniProt:
A0A2Z3JBD6
LinkDB
All DBs
Position
518975..520369
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AA seq
464 aa
AA seq
DB search
MTVLDAPRPTQTFTFQDMQLPAPLRQAVDDLNYTTPTEIQGLALPPARQGKDVLGTAATG
SGKTVAFLLPVVERLLTQRSRQTRALVLAPTRELAAQIEEVARALIAHTHLKVVSIFGGV
SQGPQQKALRAGTDIVIATPGRLLDHIGQGNIDFRALEVLVLDEADRMLDLGFLPDIRRV
LRALPTERQTLLFSATMPDSILKLAGEFQHHPVRVGVRHQGRTNDKIAEALFPVHGELKA
KLLIGLLADEEIGMDSVLVFTRTKHRANRLTEQLVNAGISAERIHGNRSQNARTEALAGF
KSGKYRVLVATDIAARGIDIDSLGHVVNFDVPVAAEDYVHRAGRTARAGKSGTAFTLVSP
QEEDEIRSIERFTKRTLTRRTLEGFDYHAKVEGKLEQPRPAQGGRGGRGQQGGGGGRSTQ
ARAQGNSGGQSAQPRRQEAPRPSRPAGNDIGGGRVGPQPARRRR
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgactgtactcgacgcaccccgccccacccagaccttcacctttcaggacatgcagttg
cccgcgccgcttcggcaggcggtggacgacctgaactacaccacccccaccgagattcaa
ggcctggcgctgccgccggcccgccagggcaaggacgtgctcggcaccgccgcgaccggc
tccggcaagacggtggcttttttgctgccggtggtcgagcggctgctgacccagcgttcc
cgccagacccgcgcgctggtgctagccccgacccgcgaactggccgcccagatcgaggaa
gtcgcccgcgccttgattgcccacacccacctcaaggtggtgagcatcttcggcggcgtg
tcgcaggggccgcagcaaaaagccttgcgcgccggcaccgacatcgtgatcgccacgccg
ggacgcctcctcgaccacatcgggcagggcaacatcgatttccgcgccctggaagtgctg
gtgctcgacgaggccgacaggatgctcgacctcggctttttgccggacatccgccgggtg
ctgcgcgctttgcccaccgagcgccagaccctgctgttctcggccaccatgcccgactcg
attctcaagctggccggtgaatttcagcaccacccggtgcgtgtcggcgtgcgccaccag
ggccgcaccaacgacaagatcgccgaggcgctgtttccggttcacggcgaactgaaagcc
aaactgctgatcggcctcctcgccgacgaggaaatcggcatggacagcgtgctggtgttc
acccgcaccaagcaccgcgccaaccgcctcaccgagcagctagtcaatgctggtatcagc
gccgagcgcattcacggcaaccgctcgcagaacgcccgcaccgaggcgctggccggcttc
aagagcggcaagtaccgggtgctggtcgccaccgacatcgccgcgcgcggcatcgacatc
gactcgctgggccacgtggtgaacttcgacgtgccggtggctgccgaggactacgttcac
cgcgccggacgcaccgcccgcgccggcaagagcggcaccgcctttaccctggtgagcccg
caggaagaagacgagattcgcagcatcgagcgcttcaccaagcgcaccctgacccgccgc
accctggagggcttcgactaccacgccaaggtggaaggcaagctcgagcagccccggccc
gcccagggtgggcgcggcgggcgcggtcagcaaggtggagggggaggacgctcaacgcag
gcgcgtgcccagggcaattcaggcggccagagcgcccagccgcgccgccaggaagctccg
cgacccagccgccccgccggaaacgacatcggtggcgggcgggtgggaccgcaaccggcc
cgccgacgccgctga
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