Deinococcus irradiatisoli: DKM44_05765
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Entry
DKM44_05765 CDS
T05530
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dez
Deinococcus irradiatisoli
Pathway
dez03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DKM44_05765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dez03400
]
DKM44_05765
Enzymes [BR:
dez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DKM44_05765
DNA repair and recombination proteins [BR:
dez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DKM44_05765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
UvrB_inter
AAA_16
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AWN22795
UniProt:
A0A2Z3JCX6
LinkDB
All DBs
Position
1147050..1150181
Genome browser
AA seq
1043 aa
AA seq
DB search
MTLAVPSLPKLLPQVPVGNVLLLPQVARAALFAAHPGSAVLLTTPDRLPLYETAGQLGSP
VTVNPGLREWDDKREHVVMDIRTAMDLFPARPEDHALTFQVGRVYHREELLSRLEKLGYE
RLTDGRLDEVGFILRGDTLDLYLHADAPEGELPALRAEFFGDELDTLRALSADGLPGDKM
PRFTLAPTEGYLSEVKWDATRLELLPGRVFLDAPEFYASVLGPMTDVLWAQLLKREVTSF
GRAPLVLEDFTLDLVTLPYYRARLGELARDVDEWRAANYRVLLLVRHERTATYLAEKLLG
NKQPRWLSLPRLEAGELGFLRASGEGGFVLEQQRTVVLTEDLIYGFQGGSALRGKKLSGK
PVTDALGLAVGDYLIHPEHGIGQFQGLETRTVLGVTRDYLNISYKNGAALAVPIELLPTL
RRHPGTTDDPPALSSLDKNAWTKAKERARKNAEEVAAKLLVQYAARQVTPGNSFAPNPEW
EAQIEKNFQFELTADQKTALKETLRDLEAPNPADRLISGDVGFGKTEVALRAAHRVVGAG
MQVAVLVPTTLLAEQHTSVFVERFKDLPVRVEGLSRFTGDKQAKSILADLAQGKVDIIIG
THRLLSDDIQFKNLGLIIVDEEHRFGVSQKEKLRALRGMPEISKDGKIEVPEGVRAVDTL
ALSATPIPRTLYMSMVGLRDMSSIQTPPKGRRPIQTILAPFDPVTVRDAIISEIERGGKV
FYIHDRIASIGARSLYLRNLVPEARIGVAHGRMNEEELEEIMLGFEEGAFDVLLSTTIVE
TGLDIPEANTILIERADRLGLAQLYQLRGRVGRRSTDAYAYLFYPPRMTENASRRLWAIA
DLQDLGSGHLLAEKDMEIRGVGNILGEEQHGHVQAVSIDVYTELLAEAVAKLKGEPISAP
PTVSIDLPISARLDPEYFSGDEDARISTYGRLSEARTLQAISRVERDLRKKFGPPSPAVQ
NFIDLAKLRLTALARRVLSIGETMTDLQITFAYKSLDYDASGLKKFPHKTEVSTFPPSVK
IQKRGIKPDDYARTLIDVLGYFG
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgaccctggccgttccctcgcttcccaagctgctgccgcaggtgccggtgggcaacgtg
ctgctgctgccgcaggtggcccgcgcggcgctcttcgccgcccatccggggtcggccgtg
ctgctgaccacccccgaccgcctgccgctgtacgaaacggccgggcaactcggttcgccc
gtcacggtcaaccccggtctgcgcgagtgggacgacaagcgcgagcacgtcgtgatggac
atccgcacggcgatggacctgtttccggcccggcccgaggaccacgccctgacctttcag
gtgggccgggtgtaccaccgtgaagaactgctttcgcggctcgaaaagctcggctatgag
cgcctgaccgatggccgcctcgacgaggtggggttcattctgcgcggcgacacccttgat
ctgtacctgcacgccgacgcgccggaaggagagctgccggccctgcgcgccgagtttttc
ggcgacgagctcgacacactgcgggcgctgagcgctgacgggctgcccggcgacaagatg
ccgcgcttcacgctggcccccaccgagggctacctcagcgaggtcaagtgggacgccacc
cgcctcgaactgctgccgggccgggtgtttctcgacgcgccggagttctacgccagcgtg
ctcggccccatgaccgacgtgctgtgggcgcagctcctcaagcgcgaagtcaccagcttt
ggccgtgcgccgctggtgctcgaagacttcacgctcgatttggtgaccttgccgtactac
cgcgcccgcttaggcgaacttgcccgcgacgtggacgaatggcgcgctgccaactaccgg
gtgctgctgctggtgcgccacgaacgcaccgccacctacctcgccgagaagctgctgggc
aacaagcagccgcgctggttgagtctgccgcgtctggaagccggcgagctcggctttctg
cgcgccagcggcgagggcggctttgtgctggagcagcagcgcacggtggtgctcaccgag
gacctgatctacggctttcagggcggcagcgccctgcgcggcaagaagctcagcggcaag
ccggtcaccgacgcactggggctggcggtcggcgactacctgatccacccggagcacggc
atcgggcagttccaggggctggaaacgcgcacggtgctgggcgtcacccgcgattacctc
aacatcagttacaagaacggcgcggcgctggcggtgccgatcgagctgctgcccaccctg
cgccgccatcccggcaccaccgacgatccgccggccctgtcgagcctcgacaagaacgcc
tggaccaaggccaaggagcgcgcccgcaagaacgccgaggaggtggcggccaaactgctg
gtgcagtacgccgcccggcaggtcacgcccggcaacagctttgcgcccaaccccgagtgg
gaagcgcagatcgagaagaattttcagttcgagctgaccgccgaccagaaaacggccctc
aaggaaacgctgcgcgacttggaggcgcccaaccccgccgaccgcctgatttccggcgac
gtgggcttcggcaaaaccgaggtggccctgcgcgcggcgcaccgggtggtgggggcgggc
atgcaggtggcggtgctggtgcccaccaccctgctggccgagcagcacacctcggtgttc
gtggagcgcttcaaggacctgccggtgcgggtcgaggggctctcgcgctttaccggcgac
aagcaggccaagtcgattctggccgacctggcgcagggcaaggtagacatcatcatcggg
acgcaccgcctgctctccgacgacattcagttcaagaacctgggcctgatcatcgtggac
gaggagcaccgcttcggggtgtcgcagaaggaaaagctgcgtgccctgcgcggcatgccg
gaaatcagcaaggacggcaagatcgaggtgcccgagggcgtgcgggcggtggacacgctg
gcgctgtcggccacgccgattccgcgcaccttatacatgagcatggtgggcctgcgcgac
atgagcagcattcagacgccgcccaagggccgccgccccatccagaccatcctggcgccg
ttcgatccggtgacggtgcgcgacgccatcatcagcgagatcgagcgcggcggcaaggtc
ttttacatccatgaccggattgccagcatcggggccaggagcctgtacctgcggaatctg
gtgccggaagcgcgcatcggcgtggcgcacgggcgcatgaacgaggaagaactcgaggag
atcatgctcgggttcgaggagggggccttcgacgtgctcctgtcgaccaccatcgtggaa
accgggctggacattcccgaggccaacaccatcctgatcgagcgggccgaccggctgggc
ctggcgcagctctaccaattgcggggccgggtagggcggcgcagcaccgacgcctacgcc
tacctgttctacccgccgcgcatgaccgagaacgcctcgcggcggctgtgggccattgcc
gatttgcaggacctcggttccgggcacctgctggccgaaaaggacatggagattcgcggg
gtgggcaacattctgggcgaagagcagcacggacacgtccaggcggtcagcatcgacgtg
tacaccgagctgctggctgaagcggtcgccaagctgaagggcgagccgatcagcgcgccg
cccaccgtcagcatcgacctgccgatcagcgcccggctcgaccccgagtacttctccggc
gacgaggacgcccgcatcagcacttatgggcggctgtccgaggcgcgcactttgcaggcg
atcagtcgggtggagcgcgacctgcgcaagaagttcgggccgcccagcccggcggtgcag
aacttcatcgaccttgccaagctgcgcctcaccgcgctggcccgccgggtactgagcatc
ggcgaaacgatgaccgacctccagatcaccttcgcatacaaatcgctcgactacgacgcc
agcggcttgaagaagttcccgcacaaaaccgaggtgagcactttcccgccctcggtgaag
attcagaagcgcggcatcaaacccgacgactacgcccggaccctgatcgacgtgctggga
tacttcggctag
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