Deinococcus irradiatisoli: DKM44_13580
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Entry
DKM44_13580 CDS
T05530
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dez
Deinococcus irradiatisoli
Pathway
dez03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dez00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DKM44_13580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dez03021
]
DKM44_13580
03400 DNA repair and recombination proteins [BR:
dez03400
]
DKM44_13580
Enzymes [BR:
dez01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DKM44_13580
Transcription machinery [BR:
dez03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DKM44_13580
DNA repair and recombination proteins [BR:
dez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DKM44_13580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RPOC_hybrid
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RnfC_N
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AWN24128
UniProt:
A0A2Z3JS50
LinkDB
All DBs
Position
2744474..2749057
Genome browser
AA seq
1527 aa
AA seq
DB search
MKDFSKVKIAIASPAKIREWSFGEVEKPETINYRTLKPEREGLFDERIFGPIKDYECACG
KYKRQRYEGKVCERCGVEVTSSKVRRYRMGHIDLATPAAHIWYVKDTPSKIGTLLDLSAA
QLEKVLYFSSYLVTNARNAQKDGRPLKRGELLSDDEYRELRNGRQETYTLQGGIDAAIRD
GEYVTRGQTLGGNVVAKMDGLAQYRFPRRAEIAYAEVAEAALPVASEMLVDQETFRAGEI
LGELEEAVQITAPMSATAFLHDMGEDSVMVELRGEAEEAEQGEVLSRIYIPHGMDVQVAN
GEVVEAGAVLARADAGARLRVSRDSRLSNVTLPKKGDAKVTAHWNRTAEYAINPTMHVLV
GDGSPVKKGQKVVGAIDKEEEIVAEADGVITLHAPASIIVSKAKVYSYQDEPLVVNGDRV
EPGDELADSGNLKSEISGRIEIDLVRKQVRVIESYDFEAKMGAEAVKELLDDLDLPTLEA
ELGEMMKDNSRHKRAKARKRLEVTRSFIASGNEPSWMIMATVPVMPPDLRPMVQVDGGRF
ATSDLNDLYRRLINRNNRLKKLMSQGAPDMIIRNEKRMLQEAVDALIDNGRRGSPVTNPG
SDRALRSLTDLLGGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGVPKRMALELFKP
FLFKVLEEKGEVTNIKQARKMLERYRDTRDSVWDALEEVIEDKVVLLNRAPTLHRLGIQA
FEPVLVEGQSIQLHPLVCEAFNADFDGDQMAIHVPLSAQAQAEARIQMLSAHNLLSPANG
EPNVKPSRDIILGIFTLTQLRKDNLGKGSAFTSEQDVLDALESGKVALNSHVTLNGADIT
PGLVKYQFSSPDEAILAVERGSIDYQDHVRIRLNGTIYDTSAGRVMFRRIVQEALGSQGH
LIDQLVNLHTAYEKDSLRDMIMTCFKQLGVEATAKLLDALKDSGFKLSTTSGITIGIDDI
VIPPAKDAILADADLKLKEIEQNYEFGFMTEEERYKQVVTLWNDTTDDVKNEVFKNFEAN
YPFNPLWIMSQSGARGNPQQIRQLAGMRGLMARPDGSTIEVPIKASFREGLTVLEYFIST
HGARKGGADTALRTADSGYLTRKLVDVAHEVVVRDVDCGTTDYTVIPLGHVDERSGEWRA
RKASEIETSIYGRTLTADVEVDGRVIAEGTMISLEDVKRITKHAKAVGEVFVRTPLNCRV
KAGVCQKCYGYDLSQAKPVSMGEAVGVVAAESIGEPGTQLTMRTFHTGGVAGGGDITMGL
PRVIELFEARKPKTQAVVADRDGVIRIEEEEERYLIRIDADDEQYSSKTATKVGKALRMI
VRDGDRVEAGQPITRGAVNPHDLLLYKDTDAAQRYLVEEVQRVYRSQGVKVHDKHIEVIV
RQMLRYVEITDGGDTTLLEGQTVERWEVEQANEALQEGQTPSSWKPVLLGITKSSLTTKS
WLSAASFQHTTHVLTEASMKGQVDELIGLKENVILGKLIPAGTGLDIVRNMQVADERTLE
KYGENVEPVSAPRPESFNYPAQPGAND
NT seq
4584 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttcagcaaagtcaagatcgccatcgccagccccgccaaaatccgcgagtgg
agcttcggcgaagtcgaaaaacccgaaaccatcaactaccgcaccctcaagcctgagcgc
gaaggtctctttgacgagcgcatcttcgggccgatcaaggactacgagtgcgcctgcggc
aagtacaagcgccagcgctacgaaggcaaggtctgcgagcgctgcggggtggaagtcacc
agcagcaaggtgcgccgctaccgcatgggccacatcgacctggcgaccccggcggcccac
atctggtacgtcaaggacacccccagcaagatcggcaccctgctcgacctgtcggcggcg
cagctcgagaaggtgctgtacttctccagctacctcgtcaccaacgcccgcaacgcccag
aaagacggccgccccctcaagcgcggcgaactgctgagtgacgacgagtaccgcgaactc
cgcaacggccgccaggagacctacaccctgcagggcggcatcgacgctgccatccgcgac
ggcgagtacgtcacgcgtgggcagaccctcggcggcaacgtggtcgccaagatggacggc
ctggcgcagtaccgctttccgcgccgcgccgagatcgcctacgccgaggtggccgaggcc
gcgctgccggtggccagcgagatgctggtggatcaggaaaccttccgcgccggagaaatc
ctgggcgaactcgaagaagcggtgcagatcaccgcgccgatgagcgccaccgcgttcctg
cacgacatgggcgaggattcggtgatggtcgagttgcgcggcgaggccgaggaagccgag
caaggcgaagtgctttcgcgcatctacatcccgcacggcatggacgtgcaggtcgccaac
ggtgaagtggtcgaagccggcgccgtgctggcccgcgccgacgctggggctcgccttcgt
gtcagccgcgacagccgcctgagcaacgtgacgctgcccaagaagggcgacgccaaagtc
accgcccactggaaccgcaccgccgagtacgcgatcaaccccaccatgcacgtgctggtc
ggcgacggcagccccgtcaagaagggccagaaggtcgtcggcgccatcgacaaggaagag
gaaatcgtcgccgaggccgacggcgtcatcaccctgcacgcgccggccagcatcatcgtc
agcaaggccaaggtctacagctaccaggacgagccgctggtcgtcaacggcgaccgggtg
gagccgggcgacgaactggccgattccggcaacctgaaaagcgagatctcgggccgcatc
gagatcgacctggtgcgtaagcaggtgcgcgtcatcgagagctacgacttcgaggccaag
atgggcgccgaggcggtcaaggaactcctcgacgacctcgatttgccgaccctggaagcc
gaactcggcgagatgatgaaggacaacagccgccacaagcgcgccaaggcccgcaagcgc
ctggaagtcacccgcagcttcatcgccagcggcaacgagccgtcgtggatgatcatggcg
accgtgccggtgatgccgccggacctgcgcccgatggtgcaggtggacggcgggcgcttc
gccacctccgacctcaacgacctctaccgccgcctgatcaaccgcaacaaccgcctcaag
aagctgatgagccagggcgcgcccgacatgatcatccgcaacgagaagcgcatgctgcag
gaagcggtggacgccctgatcgacaacggccgccgcggcagccccgtcaccaaccccggt
tccgaccgggcactgcgctcgctgaccgacctcctgggcggcaagcagggccgcttccgc
cagaacctcctgggcaagcgcgtggactactcgggccgctcggtcatcgtggtcggcccg
cagctcaagctgcaccagtgcggggtgcccaagcgcatggcgctggaactcttcaagccg
ttcctgttcaaggtgctcgaggagaagggcgaagtcaccaacatcaagcaggcccgcaag
atgctggagcgctaccgcgatacccgcgactcggtctgggacgccctcgaggaagtcatc
gaggacaaggtcgtgctgctcaaccgcgcgccgaccctgcaccgcctgggcattcaggcc
ttcgagccggtgctggtggaaggccagagcattcagctgcacccgctggtctgtgaagcc
ttcaacgccgacttcgacggcgaccagatggccattcacgtcccgctctcggcccaggcg
caggccgaagcccgaattcagatgctctcggcccacaacctgctctcgccggccaacggc
gagccgaacgtcaagccctcgcgcgacatcatcctgggcatcttcaccctgacccagctg
cgcaaggacaacctcggcaaaggcagcgccttcaccagcgagcaggacgttcttgacgcc
ctggaaagcggcaaggtggcgctcaacagccacgtgaccttgaacggtgctgacatcacg
ccgggcctggtcaagtaccagttctctagccccgacgaagcgattctggccgtcgagcgc
ggcagcatcgactatcaggaccacgtccgcatccgcctcaacggcaccatctacgacacc
tcggccggccgggtgatgttccgccggatcgtgcaggaagcgctgggaagccagggccac
ctgatcgaccagctggtcaacctgcacaccgcctacgagaaagactcgctgcgcgacatg
atcatgacctgcttcaagcagctcggggtggaagccaccgccaagctccttgacgcgctc
aaggacagcggcttcaagctctcgaccacctcaggcatcaccatcggcatcgacgacatc
gtgattccgccggccaaggacgccatcctggccgacgccgacctgaagctcaaggaaatc
gagcagaactacgagttcggcttcatgaccgaggaagagcgctacaagcaggtcgtgacg
ctgtggaacgacaccaccgacgacgtgaagaacgaggtcttcaagaacttcgaggccaac
tatccgttcaacccgctgtggatcatgtcgcagtccggcgcgcgtgggaacccgcagcag
attcgtcagctggccggcatgcgcggcctgatggcccgccccgacggcagcaccatcgaa
gtgccgatcaaggcatcgttccgcgagggcctgacggtgctggagtacttcatcagcacc
cacggcgcgcggaagggcggcgccgacaccgcgctgcgcaccgccgactccggctacctg
acccgcaaactggtggacgtggcgcacgaagtcgtggtgcgcgacgtggactgcggcacc
accgactacaccgtgattccgctgggccatgtcgacgaacgcagcggcgagtggcgcgcc
cgcaaggcctcggaaatcgagaccagcatttacggccggaccctcaccgccgacgtggaa
gtcgacggccgcgtgatcgccgaaggcaccatgatcagcctggaagacgtcaagcgcatc
accaagcacgccaaggcggtgggcgaggtgttcgtgcgcacgccgctgaactgccgcgtc
aaggccggcgtatgccagaagtgctacggctacgacctgtcgcaggccaagccggtcagc
atgggcgaagcggtgggcgtggtggcggccgagagcatcggcgaacccggcacccagctg
accatgcgcaccttccacaccggcggtgtggcgggcggcggcgacatcaccatgggtctg
ccgcgcgtgatcgagctgttcgaggcccgcaagcccaagacccaggcggtcgtcgccgac
cgtgacggcgtcatccgcatcgaggaagaggaagagcgctacctcatccgcatcgacgcc
gatgacgagcagtacagctccaagacggccaccaaggtcggcaaggcgctgcgcatgatc
gtgcgtgacggcgaccgggtggaagccgggcagccgatcacccgcggagcggtcaacccg
cacgacctgctgctctacaaggacaccgacgccgcccagcggtacctggtggaagaagtg
cagcgcgtctaccgctcgcagggcgtgaaggtgcacgacaagcacatcgaagtcatcgtg
cgccagatgctgcgctacgtggagatcaccgacggcggcgacaccaccctgctcgaaggc
cagaccgtcgagcgctgggaagtcgagcaggccaacgaagcgctgcaggaaggccaaacg
ccgtcgagctggaagccggtgctgctgggcatcaccaagagcagcctgaccaccaagtcg
tggctgtcggcggccagtttccagcacaccacccacgtgctgaccgaggccagcatgaag
ggccaggtggacgaactgatcggcctcaaggaaaacgtcatcctcggcaagctgattccg
gccggtaccggtctggacatcgtacgcaacatgcaggtggccgacgaacgcaccctggag
aagtacggcgagaacgtggagcccgtctccgcgccgcgccccgagtcgttcaactatccg
gcccagccgggcgccaacgactaa
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