Deinococcus irradiatisoli: DKM44_14585
Help
Entry
DKM44_14585 CDS
T05530
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dez
Deinococcus irradiatisoli
Pathway
dez03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dez00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DKM44_14585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dez03019
]
DKM44_14585
03400 DNA repair and recombination proteins [BR:
dez03400
]
DKM44_14585
Enzymes [BR:
dez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DKM44_14585
Messenger RNA biogenesis [BR:
dez03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DKM44_14585
DNA repair and recombination proteins [BR:
dez03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DKM44_14585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RNase_T
Helicase_C_2
ResIII
RecQ_Zn_bind
RQC
RYYR-CCHC
DEAD_2
Motif
Other DBs
NCBI-ProteinID:
AWN24303
UniProt:
A0A2Z3JGL5
LinkDB
All DBs
Position
complement(2957900..2963188)
Genome browser
AA seq
1762 aa
AA seq
DB search
MAGLFLMEAKLIAALEQRGPSLLSELVAAGLASSERLLLKVVAASEGRILQDGSRLSLPE
QVTDSGEASSEGLLAEYVIFDLETTSADPEAAQIIELAAIKVQGGQEVACFQRLVRGPVV
SGEVEQLTGITAAMLEGGSDLETVLAEFLGWAGPLPLLGHNALKYDLPVLRRALVSVGRE
LGPRTVLDSLLLAPLAFALDEEVPEVYSLESLHARLAGAAHERSHRALEDCRATLKVVGV
CLSRLHAMPQGVQAVLTALPVPEFQLAWPLATCQADAFKTPLNALLATPAQRTHVEVQGQ
TVARRPADLLPHPRPGQERMLDDVSTTLKGSRPLEGRNISVIEAPTGTGKTRGYLYPALL
QGQPGHPIIISTHTRQLQNQILDEARAVKDGGFNLNVLALKGQGNYLCPARLGDWLMSKH
DADQQQLVLPPGEARAAAFFLLHLKRGEFADLPPAPLRWTGDYQRLTQTVATQKARCGDG
CAFHRSCAFYPLFEGRAKASVVVVNHALLFQTLLQGKDDLAGLPIEKVVVDEAHDLSEAA
YAALRREVSVQSLRALSNELLEIRSRRLGERAATRGQELLDLLGRQGGQLQGLGALMAKL
REQLQTTPQQPHLLITLAERWLSAQPLLPKELLTSYLRWRERTAIVQGFLSGATIEAQKR
GESEMAGAILRLTPRLSELQERLGGWQAKLRAFAMQYGEGGGGFGYTAAVTLQLRDSPEF
KAARDHGKTLLPPLAGLSGYVRDLGRYPAIRDEATLLMQRLDAAREALQGLLERDPGEDV
YAVSAGDDNGSLWSVPLWLHARLAPLWQGLKAVTLTSATLRIPGSDPAEGEGDVGDFGLF
QEELGLPPARFLALPSVLPYDLGQVLLTNHLPLTRQPGFANLAGQELAALSPQLPHRHLH
ILTARARQQGVGKELDRQQVAHLSSVTDGADRVVRELGRRQRGTALGSAGFMQGVDIRDL
SVVSLDRLPFPIPDVVLSQQRVALGDFEKYWNRIYLPRAVLKFVQAFGRLVRDDRCEVGR
GAFILWDKRLAVSHYQARFLGALPVPKENIRRLPDRAAMYGALEELFGLSLNMPDLLAPK
QQLIHELIEQIRSSSPDEWPQILEKALRELFEIPEATLRPGQWEGLRAALEGRDVLTVLP
TGSGKSVIFQLPALLSPGYTLVISPLVALMQDQVLRLQQLGLPAAGLWGGLSRGEQLSYL
NDTERGDVKLLYVAPERVRRSKDLQELIKRTPPTRVVYDEAHCLTEWGHDFRPDYLKVSE
TLRGWGLRPPISAFTATATPAVQAQLGTLLDLQGPQHTVMPVARDNLHYLVQATTKDQRS
QVLVDLILGLQRTEAGKAGRVIVYCGSRDATERVAALLRELHVKAEAYHAGLSPAIRAEL
IELFQEREISVMAATNAFGMGVDAPDIRLVVHYDPPLSLEAYVQEAGRAGRDGQPAHAVL
LKSGRLRLRAENLIRRSYPGSAEVEELLRTISKKTYPTERELSDEEIDISRLPTVLHLLE
EAGVVDYAYVPGFYRVFGLYGVEPPQDAEVQELIGAGAPVNLSRRYGKAEAERLQEKLHQ
YAREGVLGVTPLAPALDIYVKRWNLAPYEAKCKALTEAKMKRFGEFELFLNAQHCREYQL
HTYFDRDRKPRFRCGRCDSCQTNAAYPWSGFQQDLSNIWNPEREVLRLMHHFKDRPRGRG
TLIRLLMGEDGYKRGDAFQPYSTLEKSSPGYGLLKYLDKTKIEQAIATLEKRRCVEATSS
DTYTVLALTERGQQEAAKWIRP
NT seq
5289 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcctcttcctgatggaggccaagttgatcgccgccctggaacagcggggaccg
agcttgctcagcgagctggtggcggcggggctggcttccagcgagcgcctgctcctcaag
gtggtggccgccagtgagggccgcatcctccaggacggctcccggctgtcgcttcccgag
caggtgaccgacagtggggaggcgagcagcgagggcctgctcgccgagtacgtcattttc
gacctggaaacgaccagcgccgacccggaagcggcccagatcatcgagctggcggccatc
aaggtccagggcggccaggaagtagcctgcttccagcgcctggtgcgcggtccggtggtc
agcggcgaagtcgagcagttgaccgggatcacggcggcgatgctcgagggcggctcggac
ctggagacggtgctcgccgagtttctgggctgggctggacccctgccgctgctcggccac
aacgcactgaagtacgacctgccggtcttgcgccgggccctggtcagcgtcggacgcgag
ctcgggccgcgcacggtgctcgactcgctgctgctggcgccgctggcgttcgcactcgac
gaggaggtgccggaggtctacagcctcgagtcgctgcacgcccgcctcgccggtgcagcc
catgagcggtcgcaccgggccctggaggactgccgggccaccctcaaggtggtcggtgtc
tgcctcagccgcctgcacgcgatgcctcagggcgtccaggcggtgctcacggccctgccg
gtgccggagttccagctcgcctggccgctggccacgtgccaggccgacgcgttcaaaacg
ccgctgaacgccctgctggccaccccggcccagcgcacccacgtcgaggtgcagggtcag
acggtagcccggcggcccgccgacctgctgccccacccgcgtcccggtcaggagcggatg
ctggatgacgtgtcgaccacattaaaagggagtcgtccccttgaaggccgcaacatcagc
gtgatcgaagcgccgaccggcaccggcaaaacgcgcggctacctctacccggcgctgctt
cagggccagccgggacacccgatcatcatcagcacccacacccgccagctgcaaaaccag
atcctggacgaagcccgcgccgtgaaggacgggggctttaatctcaacgtgctggccctc
aaggggcaggggaactacctctgtccggcgcgtctgggcgactggctgatgagcaagcac
gacgctgaccagcagcagctggtgctgccgcctggcgaggcccgcgccgccgccttcttt
ctgctgcacctgaagaggggcgagttcgccgatctgccgcctgcgccgctgcgctggacc
ggggactaccagcgcctgacccagaccgtcgccacccagaaggcccgctgcggcgacggg
tgcgcctttcaccgctcgtgcgccttctatccgctgtttgagggccgggccaaggccagc
gtggtcgtggtcaaccacgccctgctgtttcaaacccttctgcagggcaaagacgacctg
gccgggctgccgatcgagaaggtggtcgtcgacgaggcccacgacctgagtgaggcggcc
tacgccgcgctcaggcgcgaagtcagcgtgcaaagcctgcgggcactcagcaacgagctg
ctcgagatccgttcccgccgactgggcgagcgggccgcaacccgcggccaggaactgctc
gacctgctgggccgtcagggcggccagctgcagggcttaggtgccttgatggctaaactg
cgcgagcagctgcagaccacgccccagcagccgcacctgctgatcaccctggcggagcgt
tggctctcggcgcagccgctcctccccaaggaactgctgaccagctacctgcgctggcgt
gagcggacggccatcgtccaggggtttctcagcggcgcgaccatcgaggcccagaaacgc
ggcgagagcgagatggccggcgccatcctgcggctcaccccccgcctgagcgagctgcaa
gagcgcctcggcggctggcaggccaagctgcgggcctttgccatgcagtacggcgagggc
ggcgggggcttcgggtacaccgccgccgtgaccctgcaactgcgcgacagccccgagttc
aaagccgcgcgtgaccacggcaagaccctgctgccgccgctcgccgggctctcggggtac
gtacgcgacctcggccgctacccggccatccgcgacgaggccaccctgctgatgcagcgg
ctcgacgctgcccgcgaagcgctgcagggactgctcgagcgcgacccgggtgaggacgtc
tacgcggtgagtgccggcgacgacaatggcagtctgtggagcgtgccgctgtggctgcat
gcccggctggccccgctgtggcagggcctcaaggccgtgaccctgaccagcgccaccctg
cggatccccggcagcgacccggccgagggcgagggtgacgtgggcgacttcggcctcttc
caggaagagctcggcttgccgccggcccgtttcctggccctgccctcagtactgccctat
gacctgggccaggtgctgctcaccaaccacctgccgctgacccggcaaccgggcttcgcc
aacctcgccggtcaggagctggcagccctctcgccgcagctgcctcaccgccacctgcac
atcctgacggcccgtgcccggcagcagggcgtcggcaaggagctcgaccgccagcaggtg
gcgcacctgtcgagcgtgaccgacggcgccgaccgggtggtgcgcgaactcgggcggcgc
cagcgcggtacagccctcggctcggcgggcttcatgcagggggtggacatccgcgacctg
agcgtcgtcagcctcgaccgcctgccgtttccgatccccgacgtggtgctctcgcagcag
cgggtggcgctgggcgactttgagaagtactggaaccggatctacctgccgcgggcggtg
ctcaagttcgtgcaggcgttcggccgtctggtgcgcgacgaccggtgtgaggtgggccgc
ggggcgttcatcctgtgggacaagcgcttggcggtcagccactaccaggcccgcttcctg
ggggctctgccggtgccgaaagagaacatccgtcggctgcccgaccgggcggcgatgtac
ggggccctggaagaactgtttggcctctccctgaacatgccggacctgctcgcccccaaa
cagcagctcatccacgaactgatcgaacagatcaggagcagcagccccgacgagtggccg
cagatcctggagaaagcgctcagggagctcttcgagatccccgaagccaccctgcgtccc
ggtcagtgggagggcctgcgggcggccctggaagggcgcgacgtgctgacggtgctgccc
accggctccggcaagtcggtgatcttccagctgccggccctgctgagccccggctacacg
ctggtgatctcgccgctggtggcgctgatgcaggaccaggtcttgcggcttcagcagctc
ggcctgccggcggcggggctgtggggcgggctgtcgcgcggcgagcagctgagctacctg
aacgacaccgagcgcggtgacgtcaagctgctctacgtcgcgcccgagcgggtgcggcgc
agcaaggacctccaggaactcatcaagcgcacgccgccgacccgggtggtctacgacgag
gcccactgcctgaccgaatggggccacgacttccgcccggactacctcaaggtctccgag
accttgcgcggctggggcctgaggccgcccatctcggcgttcacggcgacggccacccca
gccgtgcaggcgcagctcggcaccctgctggacctgcaaggtccccagcacaccgtcatg
ccggtggcccgagacaacctgcactacctggtccaggccaccaccaaggaccagcggtcc
caggtgctggtggacctgatcctgggtctgcaacgcaccgaggcaggcaaggccgggcgc
gtcatcgtctactgtggcagccgggacgccaccgagcgggtcgcggcgctgctgcgcgag
ctgcacgtcaaggccgaggcgtaccacgccgggttgtcgccggccatccgcgccgaactg
atcgagctcttccaggagcgcgagatctcggtgatggcggcgaccaacgccttcggtatg
ggggtggacgcccccgacatccggctggtggtccactacgacccgccgctgtcgctcgag
gcctacgtgcaggaagcgggccgggccggacgtgacggtcagccggcccacgccgtgctg
ctcaagtccggtcggctgcgcctgcgggccgagaacctgatccgcaggtcctaccccggt
tcagcagaagtcgaggaactcctgcgcaccatcagcaagaagacctacccgaccgagcgc
gaactgagcgacgaggagatcgacatctcgcgtctgccgacggtgctgcacctcctcgag
gaagcgggggtggtggactacgcctatgtgccggggttctaccgggtcttcgggttgtac
ggggtggagccgccgcaggacgccgaggttcaggagctgatcggggccggggccccggtc
aacctgtccaggcgctacggcaaggccgaggccgagcggctgcaggagaagctgcaccag
tacgcccgcgaaggggtgctgggggtcacgccgctggctccggccctcgacatctacgtg
aagcgttggaacctcgcgccgtacgaggccaagtgcaaggccctgaccgaagccaagatg
aaacgcttcggcgagttcgagctcttcctcaacgcccagcactgccgcgagtaccagctg
cacacctacttcgaccgtgaccggaagccgcgcttccgctgcgggcgctgcgacagctgc
cagaccaacgccgcctacccctggagcggctttcagcaggacctcagcaacatctggaac
cccgagcgcgaggtgctgcgcctgatgcaccacttcaaagaccgcccgcgcggacgcggc
accctgatccggctcctgatgggggaggacggctacaaacgcggcgacgcgtttcagccg
tacagcaccctggagaaaagttcgcccggctacggcctgctcaagtacctcgacaagacc
aagatcgagcaggcgatcgcaacgcttgagaaacgccgctgtgtggaggccacctccagc
gacacctacaccgtactggccctgaccgagcgcggtcagcaggaggccgccaagtggatc
cgaccctaa
DBGET
integrated database retrieval system
