KEGG   Cavenderia fasciculata (cellular slime mold): DFA_01138
Entry
DFA_01138         CDS       T02668                                 
Symbol
prpf4
Name
(RefSeq) WD40 repeat-containing protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
dfa  Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dfa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    DFA_01138 (prpf4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dfa03041]
    DFA_01138 (prpf4)
Spliceosome [BR:dfa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    DFA_01138 (prpf4)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR36-Utp21_1st EIF3I WD40_MABP1-WDR62_2nd WDR55 ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_Aladin PRP4 Beta-prop_WDR19_1st Beta-prop_IFT122_1st Beta-prop_SCAP WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 Beta-prop_TEP1_C Beta-prop_EIPR1 WD40_RFWD3 Beta-prop_WDR41 Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_Vps41 WD_LRWD1 Beta-prop_DCAF4 Beta-prop_SPT8 Beta-prop_WDR35_TULP_N PROPPIN Beta-prop_VPS8 Beta-prop_NWD2_C MGP3_C Beta-prop_NUP159_NUP214
Other DBs
NCBI-GeneID: 14873477
NCBI-ProteinID: XP_004359109
UniProt: F4PQZ4
LinkDB
Position
Unknown
AA seq 502 aa
MNMNEMISIFVFFNNNNNSMSNEEKKRIFFGAIQANKVTTQTTSEQQQQQDEDQQDDQQQ
QQPEFLPFSRFTKESQERHGKALEDFERKKRSKHVILPTDDALVKMKLRELSEPIILFGE
RPDERRARLKDICIDRNIANANPLAILKREGEEEKEEGEAFLTEGSQDLKLARLHIAEYS
IKAASLRIKRAKLEKEKEAVVLAANKDILDPEKWQKTELEIEITEEKERYKQFTMASSEM
GDERQLSVAVFSPLDSGVVATSSWSGVSKIWKLSDSSIECTNIMVDQPNPIAVFDSTIHT
DSVNRVAFHPMGRHLATSCSDRSWRLFDIETKQTLLDQEGHGGAVFGIAFQQDGSLLASG
ATDQLVRLWDMRSGRPIHYFRGHAKQVISVDWSPNGYHVASSSEDNTVIVWDIRKKEKLH
QILAHSSIVSCVKFQHSPNHSAASFLATSSFDNTVRLWSPIDFSPVSILQGHSSKVTSVD
FSLDNSKLVSSSFDKTWKVWSK
NT seq 1509 nt   +upstreamnt  +downstreamnt
atgaatatgaacgaaatgatttcaattttcgtcttttttaataataataataatagtatg
agtaatgaagagaaaaagagaatcttttttggtgcaatccaagcaaataaagtaacaact
caaacaactagtgaacagcagcaacaacaagatgaagatcaacaagacgatcaacaacaa
caacaaccagaattcttaccattttcaagatttacaaaagaatcacaagaaagacatggt
aaagcattggaagattttgaaagaaaaaagagatcaaaacatgttatattgccaacagac
gatgcattggtaaagatgaagttgagagaattgagtgaacctattatattgtttggtgaa
agaccagatgaaagaagagcacgtctaaaggatatatgtatagatagaaacattgcaaat
gccaaccctttggccattctaaaaagagagggtgaagaggaaaaggaggaaggtgaggcg
tttttgacagaaggttcacaagatttgaaattggctcgtctacatattgcagaatactcg
ataaaggctgcttcattgcgtataaagcgagctaaattggaaaaggaaaaggaggcagtc
gtattggctgcaaacaaggatatattggatccagagaaatggcaaaagacagaattggaa
atagagattacagaggaaaaggaaagatacaaacaatttacaatggcaagttcagagatg
ggtgatgaacgtcaactttcagtggctgtcttttcgccgctcgattcgggggttgtggca
acgtcgtcgtggagtggtgtctccaagatatggaagttgagcgacagctcgattgaatgt
acaaatataatggtcgatcaaccaaacccgatcgctgtctttgactctacgatacacacc
gactctgtgaaccgtgtcgcctttcatccgatgggacgccacctcgcaacaagttgcagt
gatcggtcgtggcgactctttgacattgagaccaagcagacactactcgaccaagaagga
catggtggcgccgtctttggcatagcctttcaacaagacggctcgctgctggcgtctggc
gcaaccgaccaacttgtccgcttgtgggacatgcgtagtggacgtcccatacactatttc
agaggacacgccaaacaagttatatcggtagactggtcacccaacggctaccacgttgcc
agtagctcagaagacaataccgtgattgtctgggacattagaaaaaaagaaaaactacat
caaatccttgcccactcttccattgtctcgtgtgtcaaattccaacactctcccaatcat
tcagcagcctcttttctcgccacctcttcctttgacaataccgttcgtctttggtcccca
atcgatttctccccagtctctattcttcaaggtcattcaagcaaggtaacctctgtcgac
ttttctcttgataattctaaattggtttcttcttcttttgataaaacttggaaagtttgg
tcaaaataa

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