Cavenderia fasciculata (cellular slime mold): DFA_01487
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Entry
DFA_01487 CDS
T02668
Symbol
tifA
Name
(RefSeq) DEAD/DEAH box helicase domain-containing protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03013
Nucleocytoplasmic transport
dfa03015
mRNA surveillance pathway
dfa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DFA_01487 (tifA)
09122 Translation
03013 Nucleocytoplasmic transport
DFA_01487 (tifA)
03015 mRNA surveillance pathway
DFA_01487 (tifA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfa03019
]
DFA_01487 (tifA)
03041 Spliceosome [BR:
dfa03041
]
DFA_01487 (tifA)
03009 Ribosome biogenesis [BR:
dfa03009
]
DFA_01487 (tifA)
03012 Translation factors [BR:
dfa03012
]
DFA_01487 (tifA)
Enzymes [BR:
dfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DFA_01487 (tifA)
Messenger RNA biogenesis [BR:
dfa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
DFA_01487 (tifA)
mRNA cycle factors
Stress granule specific factors
DFA_01487 (tifA)
Spliceosome [BR:
dfa03041
]
Complex C
Other components
EJC/TREX
DFA_01487 (tifA)
Ribosome biogenesis [BR:
dfa03009
]
Eukaryotic type
90S particles
Helicases
DFA_01487 (tifA)
Translation factors [BR:
dfa03012
]
Eukaryotic type
Initiation factors
eIF-4
DFA_01487 (tifA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_30
ResIII
AAA_19
CMS1
tRNA-synt_1b
AAA_22
TniB
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
14873689
NCBI-ProteinID:
XP_004359451
UniProt:
F4PT25
LinkDB
All DBs
Position
Unknown
AA seq
418 aa
AA seq
DB search
MSSRGGRSSGGGDKRVAGRSGSVESAKKVVDEHYEANSKVEVYPTFESIHLREDLLRGIY
GFGFEKPSAIQQRAIVPIIKGRDTIAQAQSGTGKTATFSIGALQSVDVSIKNPQVIILSP
TRELAQQIQKVVMALGGFMSVQVHSFVGQKTISEDVRRLEQGVHIASGTPGRVIDLISRK
ALNTRQIKMLILDEADEMLSLGFQQQINDVYRYLPPATQIVLVSATLTQDVVSMTERFMT
DPVRILLKRDELTLEGIKQFFVSVEKEEWKFGTLCDIYDSLTITQAVIFCNTKSKVDALT
NKMREANFTVASLHGDMDQKEREEIIRSFRSGENRVLITTDILARGIDVQQVSLVINYDL
PMDRENYIHRIGRSGRFGRKGVAINFVKSSDIRILRDIEQFYSTQIDEMPMNFADSIN
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaagaggaggtagatcaagtggtggtggagacaagagagtagcaggtagaagt
ggaagtgtagaatcggcaaagaaagtagtagatgaacattatgaagcaaatagtaaagta
gaagtatatccaacattcgagtcgattcatttaagagaggacttgttacgtggtatctat
ggttttggttttgaaaagccatcggccattcaacaacgtgctattgtacctatcatcaaa
ggaagagatacgattgcacaagcacagagtggtacgggtaagactgccaccttttcaatt
ggtgcattgcagtcggtcgatgtcagcatcaagaacccacaggttatcatcttgtcgccg
acacgtgaactcgcacaacagattcaaaaggtcgtcatggcattgggcggctttatgagt
gtacaggtacactcgtttgtcggacaaaagactatcagcgaggatgttcgtcgtctcgag
caaggtgtacatattgcatcgggtacacctggtcgtgtgattgatttgatttcaagaaag
gcactcaacacacgtcagatcaagatgttgattttggatgaagccgatgagatgctttca
cttggtttccaacaacagatcaatgatgtctatagatacttgccaccagccactcagatc
gtgttggtctcggccactcttacacaggacgtcgtatccatgacagagcgtttcatgacc
gaccccgtccgtatccttctcaagcgtgatgagttgacactcgaaggtatcaaacaattc
tttgtgtcagtcgaaaaggaggaatggaagtttggcacactctgcgatatctatgattct
ctcaccatcacacaagctgtcatattttgcaacaccaaatcaaaggtcgatgctctcacc
aacaagatgcgtgaagcaaactttactgtcgccagtttacacggtgatatggatcaaaaa
gaacgtgaagaaattattagatcatttagatctggtgaaaatcgtgtattaattactaca
gatattttggcaagaggtattgatgttcaacaagtttcattggttatcaattacgatctc
ccaatggatcgtgagaattatattcatcgtatcggtcgttccggtcgttttggaagaaag
ggtgttgccattaatttcgtaaagagttcagatatcagaattttaagagacattgaacag
ttttattctactcaaatcgatgaaatgccaatgaactttgcagattcaattaattaa
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