Cavenderia fasciculata (cellular slime mold): DFA_01781
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Entry
DFA_01781 CDS
T02668
Symbol
rfc1
Name
(RefSeq) replication factor C subunit
KO
K10754
replication factor C subunit 1
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03030
DNA replication
dfa03410
Base excision repair
dfa03420
Nucleotide excision repair
dfa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DFA_01781 (rfc1)
03410 Base excision repair
DFA_01781 (rfc1)
03420 Nucleotide excision repair
DFA_01781 (rfc1)
03430 Mismatch repair
DFA_01781 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dfa03032
]
DFA_01781 (rfc1)
03400 DNA repair and recombination proteins [BR:
dfa03400
]
DFA_01781 (rfc1)
DNA replication proteins [BR:
dfa03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
DFA_01781 (rfc1)
DNA repair and recombination proteins [BR:
dfa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
DFA_01781 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
AAA
Rad17
BRCT
RuvB_N
PTCB-BRCT
nSTAND3
AAA_22
AAA_33
AAA_14
AAA_16
Sigma54_activ_2
RNA_helicase
AAA_5
AAA_18
Motif
Other DBs
NCBI-GeneID:
14873914
NCBI-ProteinID:
XP_004359746
UniProt:
F4PUN1
LinkDB
All DBs
Position
Unknown
AA seq
1578 aa
AA seq
DB search
MVKKKTSMKDHAQGTISMHAFMERIQKNKAGSNNNGDSQTSDSTTATATSTPTKSPSVKK
VEPSSSSSSTTSTSSTKSKDKRNSVDSSSKSSSSSSSKTSILKKRKDMDHDSHDDDEPDN
RSDKKKQEKKGSGSGNGESKKSSSSSSSSSKQSSKIKDDIFDDDDIFQEDSDKENRTTHH
RLKKTKTVAAPAPAVEPSPKKKKKQSTTSKSPSSTPTKSSTNKLNFNNNNGGGNGEQPST
PIKMESLTSSLSVKSEKEKSDKHSHSKDTKDTTTKRHQSPSKQQQHQSPAKSAIDAFFSP
SKQSSSSSSKVAPPATPEKKEPTPQIIPSFKKEKVNMLDEYIPSHDDDDTEEDIEMSDDA
GVADNFDQQQQQQKQKEKEKETEMELEKRSKESFMIQKKMKMEEEKAKKEKEQSSMLFND
DDQKEKEERAKKEKEQLLEKERIKKEQLEKEERAKKEQLERENKIKLEKAKQLAEKERLE
KEEREKQKKRVSIEKKKQQEDLDDIDSTDEEADRVTRHITPTKLQQQQQQQEKKTPPPPS
SLKKLTSGIYAPDSIFDDDDEDDIYSTIKSSQKRDNSISSSSTTTTPMSPKPNKNYDVSK
QLNSVKKEPKNDGDNEDLTEEETQDMRETRALSKDKLIGSLIHEDQVKHEQHHDTKPSTP
SKPSILVRKTPAKPSTPSSTSTSTTTTKNNITKTIVHNNTPIKVAAPSPAKVVEPPSPAK
PNKPTPKRKAGAKEPAPEKTEEEKRIAKEKQRQFLMKGGKCAPPPNKGSKPEPRGAPKCL
AKKYFTVTGVLDCFERTEIKGFVQLYGGQFSDNVIKKITHVVVGEGGGEKKKEIIDDRLR
EKSIVVLTEDEFLAMINNSFDQGSDRDMSPQQQQDDEMDLDEIENSDSDRDRTTTSTSTT
TSTSNSGNNSYSSTPPIIKDSESESDRDIKRPMPTAAPIAKKTISLSISKSKPTNSNNIN
NNNINNNSNGEFRQAQVSSKQMGFAPASNQRFVNAMSDSVQSDMDLIKLPASFKNIKKGN
DMMWVDKYKPTTSSDIIGNPGMISHLKEFLMDFDKPLRKYKLNAVLIAGPPGIGKTTCAS
MILKEMGYDVIEMNASDTRSKNDIDHLLGGVSDNTSITQFFSVNKQVKTKKKAIIMDEVD
GSSGNNDRGGIKEIIGMIKTSKVPFICICNDYYSTKIKSLKSYCLEMRFNRPTPKQVSDR
LLQIAKNEGMQLNQYMAEKLFLSTKNDIRQTIHLMQMLNRGNNEKINPLNIDKKIEMAVK
DFETSPFEASSVLLSSANKTLNERMELYFSDYNLIPLMVQENYLTNVPRNQTTDRKGYTN
EMELFSKAAESISESDVVSKEIYSHQSFELLPTYAIMSTIIPCHLIHGSSTNFYPTFPQY
LGKQSNYGKQKRFVSELQLHMRSSSAQSLANKSETRLYYTPMFKHYMVQPMIRDKADGVE
SVIDFMDEYGLTEEDRDDVIELTTWGVKVEESEELKSIPPAVKSSFTRKWRAGSHAVYDV
SMSATRGNSVSDHASTMDFEEAGAQEESTAKIEEEEDQQSEEQAQQDVVDKLIKPSKSSS
KQPAKAAAKKKPAATKKK
NT seq
4737 nt
NT seq
+upstream
nt +downstream
nt
atggtaaagaaaaagactagtatgaaagatcatgcccaaggcactatctcaatgcatgct
tttatggagagaattcaaaagaataaggctggtagtaataataatggtgactcgcaaaca
agtgactctactacagctactgctacctctactccaaccaaatctccttctgtcaaaaag
gttgaaccttcgtcatcatcatcatcgacaacatcaacatcatcgacaaaatcaaaggat
aagagaaatagtgtagattcaagtagtaaatcatcttcatcatcatcatcaaagacatca
attctaaaaaagagaaaggatatggatcatgatagtcacgatgatgatgagccagacaat
cgtagtgacaagaaaaaacaagaaaagaagggttcaggatcaggtaatggtgaaagtaaa
aagtcatcatcctcctcatcttcatcctccaaacaatcaagtaagattaaagatgatatc
tttgatgacgatgatattttccaagaagattcagacaaggagaatagaacaactcatcat
agattgaaaaagacaaagactgtagctgctcctgctcctgctgttgaaccttcaccaaaa
aagaagaaaaagcaaagtactactagcaaatctccatcttcaacaccaaccaaatcatca
acaaacaaacttaatttcaacaacaataatggcggtggaaacggtgagcaaccatccacc
ccaattaaaatggaatcacttacatcatccttgtcagtcaagtcggaaaaggaaaagagt
gataaacattctcattcaaaagataccaaagatactactactaaacgtcaccaatcacct
tctaaacaacaacaacatcaatcacctgcaaagagtgcgatagatgcattcttttctcca
tctaaacaatcatcatcttcatcttcaaaagttgcaccacctgcaacacctgaaaagaaa
gaaccaactcctcaaattataccttcttttaaaaaggaaaaggttaatatgttggatgaa
tacataccgagtcatgatgatgatgatactgaagaggatattgaaatgtctgatgatgca
ggtgttgcagataattttgatcaacaacaacaacaacaaaagcaaaaggaaaaggaaaag
gaaactgaaatggaattggagaaacggtcaaaggaaagttttatgattcagaaaaagatg
aagatggaagaagaaaaggctaaaaaggaaaaagaacaatcttccatgttgtttaatgat
gatgatcaaaaggaaaaggaagaaagagctaaaaaggaaaaagaacaattgttggaaaaa
gaaagaattaaaaaggaacaattggaaaaggaggaaagagctaaaaaggaacaattggaa
agagaaaacaagattaaattggaaaaggccaaacaacttgctgaaaaggagagattggaa
aaagaggaaagagaaaagcaaaagaaaagagttagtatcgagaaaaagaaacaacaagaa
gatcttgatgatattgattcgacagatgaagaagctgatcgtgtaacaagacatattact
ccaaccaaacttcagcaacaacaacaacaacaggagaaaaagacaccaccacctccatct
tctcttaaaaaactcacatctggtatctatgcacctgatagtatatttgatgatgacgat
gaagatgatatctattcaactataaaatcatctcaaaagagagataatagtattagtagt
agtagtactacaactactccaatgtcaccaaaaccaaacaaaaactatgatgtttcaaaa
caactaaactctgtcaaaaaggaaccaaagaatgacggtgataatgaagatttaactgaa
gaggaaacacaagacatgcgagaaacacgtgcactcagtaaagataaattgattggttca
ttgatacacgaggatcaagtcaaacatgaacaacatcacgatacaaaaccatcaacacca
tcgaaaccatctatattggttagaaaaacacctgccaaaccatcaactccctcttctact
tccacttcaacaacaacaactaaaaacaatattacaaagactattgttcacaataataca
ccaatcaaggtagcagcaccatcacctgccaaggttgtagaacctccatcacctgccaaa
ccaaacaaacccactcccaagagaaaggcaggtgcaaaggaaccggcacctgaaaagaca
gaagaggaaaagagaatagccaaggagaagcaaagacaattcctcatgaagggaggcaag
tgtgcaccaccacccaacaagggttccaagcctgaaccacgtggtgctccaaaatgtcta
gccaaaaagtactttaccgtcactggtgtattggactgctttgaaagaactgaaatcaaa
ggatttgtccaattgtatggaggtcaattctctgacaatgtcattaaaaagattactcat
gtggtcgttggagaaggtggtggtgaaaagaaaaaagaaataattgacgatagattaagg
gaaaagagtattgttgtccttacagaagatgaatttttggccatgatcaataattcattt
gatcaaggtagtgatagagacatgtctccccaacaacaacaagatgatgaaatggatttg
gatgaaattgaaaatagtgatagtgatagagatagaacaacaacatcaactagtactact
actagtactagtaatagtggtaataatagttatagttcaactccaccaatcattaaagac
tctgaatctgaaagtgatagagatattaaacgaccaatgccaacagctgctccaatagca
aagaaaacaatttcattgtctatatccaaatcaaaaccaactaatagtaataatattaat
aataataatatcaataataatagtaatggtgaatttagacaagcacaagtatcaagtaaa
caaatgggatttgcaccagcaagtaatcaaagatttgtcaatgcaatgagtgattctgtt
caaagtgatatggatttgatcaaacttccagcatcatttaaaaacattaaaaaaggaaat
gatatgatgtgggtcgataaatacaagccaaccactagttccgatatcattggtaatcct
ggtatgatttctcatctcaaagagtttctaatggattttgacaaacctcttagaaaatac
aagctcaatgctgtattgattgctggtccaccaggtattggaaagacaacttgtgctagt
atgatactcaaggaaatgggttacgatgtcattgaaatgaatgcttcagatactagaagt
aaaaatgatattgatcatttattaggtggtgtatctgataatacttcaattactcaattc
ttttctgttaataaacaagtaaaaacaaagaaaaaagcaattattatggatgaagttgat
ggatcatcaggtaataatgatagaggcggtataaaggaaatcattggtatgattaaaacg
agcaaggtaccatttatttgtatatgtaatgattattatagtacaaagatcaaatctttg
aaatcatattgtctagaaatgagatttaatcgtccaactcccaaacaagtatcagacaga
ctattgcaaattgccaaaaatgaaggaatgcaattaaatcaatacatggccgagaaatta
tttctctcaaccaaaaatgatattcgtcaaactattcatttaatgcaaatgttgaataga
ggaaataatgaaaaaattaatcctttaaatattgataaaaagattgaaatggcagtaaaa
gattttgaaacaagtccatttgaagctagtagtgttttattatcaagtgcaaacaaaaca
ttaaatgaaagaatggaattatattttagtgattataatttaattccattgatggttcaa
gaaaattatttgacaaatgtacctagaaatcaaactaccgatagaaagggatatacaaac
gaaatggaattattctcaaaggctgcagaatctattagtgaatctgatgttgttagcaag
gaaatttattctcatcaaagttttgaattattaccaacctatgctatcatgtctactatt
attccatgtcatttaattcatggaagtagtacaaatttttatccaacttttcctcaatat
cttggaaaacaatcaaattatggtaaacaaaaaagatttgtatctgaacttcaattacat
atgagatcatcatcggctcaatcacttgccaataagagtgaaactagactttactatact
cccatgtttaaacattacatggtacaaccaatgattagagacaaggctgatggtgttgaa
tcggttattgattttatggacgagtatggcctcactgaagaagatcgtgacgacgtgatc
gaattgacaacttggggtgtaaaggttgaagaatctgaggaattaaagtctatcccacca
gctgtcaaatcctcatttaccagaaaatggagagctggttcacatgcagtttatgatgtt
tcaatgtctgcaaccagaggtaacagtgtctctgaccacgcctctacaatggactttgaa
gaagccggtgcacaagaagagtcaactgccaagattgaagaagaggaagatcaacaatca
gaagaacaagctcaacaagatgtagtggataaattaattaaaccttccaaaagtagttca
aaacaacctgccaaagctgctgccaaaaagaaacctgctgctactaaaaaaaaataa
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integrated database retrieval system
