Cavenderia fasciculata (cellular slime mold): DFA_02643
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Entry
DFA_02643 CDS
T02668
Symbol
prpf38a
Name
(RefSeq) putative U4/U6.U5 small nuclear ribonucleoparticle-associated protein
KO
K12849
pre-mRNA-splicing factor 38A
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DFA_02643 (prpf38a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dfa03041
]
DFA_02643 (prpf38a)
Spliceosome [BR:
dfa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
DFA_02643 (prpf38a)
Complex C
U4/U6.U5 tri-SnRNP related factors
DFA_02643 (prpf38a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
14871019
NCBI-ProteinID:
XP_004357366
UniProt:
F4PZZ0
LinkDB
All DBs
Position
Unknown
AA seq
309 aa
AA seq
DB search
MSNNNNNNNEEQDNNNDQDQDQPMIEQDDGDEEQDFEKLADYQLEQDDDDDDDGYDDQGD
QDDQDNNQQQQQQQQDNGNQEDDDDDDDDDDDDNDNDGEKEGKEPHMRPSLLLARRKKTI
HGTHSRNLIEKILRIKIQSHPYWKEKCMGLNEETLVDRAMALTSFGGTWGGMKQPTHFIC
LMLKMLQIQPDKDIIIEFITNQDFKYVRILGAFYLRLVGKPVDIYNYLEPLYNDYRSVRM
KNDLGQFNKIHVDEFVQELLTGNYACEIVLPNLPSRRTLEQQGLLEKRVSVLEELKLINM
DNLKQDVLE
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgagtaataataataataataataatgaagaacaagacaacaacaatgatcaagatcaa
gatcaaccaatgatagaacaagacgatggtgatgaagaacaagactttgaaaagcttgca
gattatcaactagaacaagacgacgatgatgatgatgatggttatgatgatcaaggtgat
caagatgaccaagataacaatcaacaacagcaacaacaacaacaagacaatgggaatcaa
gaagatgacgacgacgacgatgatgatgatgacgatgataatgacaatgatggtgaaaag
gaaggaaaagaacctcatatgagaccatcattattattggcaagaagaaagaaaacaatt
catggtacgcatagtagaaacttgattgaaaagatcctaagaatcaagattcaaagtcat
ccttattggaaggaaaagtgtatgggtttaaatgaggaaacattggttgatagagcaatg
gcattaacatcatttggtggtacttggggaggtatgaaacaacctacacatttcatttgt
ttgatgttaaagatgctacaaattcaaccagacaaggatatcattatcgagtttatcacc
aatcaagatttcaagtatgttagaattcttggtgcattctatcttcgattggttggtaaa
ccagttgatatttacaattatttggagccattatacaatgactatagatcggtcaggatg
aagaatgatcttggtcaattcaacaagatacatgtagatgagtttgtacaggaactgttg
actggcaactatgcttgtgaaattgtacttcccaatctaccgtctcgaagaacattggaa
caacaaggactattggaaaaacgtgtcagtgtactagaagagttaaaactcatcaatatg
gataacctcaaacaagatgttttggaatga
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