Cavenderia fasciculata (cellular slime mold): DFA_02782
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Entry
DFA_02782 CDS
T02668
Symbol
lsm4
Name
(RefSeq) LSM domain-containing protein
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03018
RNA degradation
dfa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DFA_02782 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
DFA_02782 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfa03019
]
DFA_02782 (lsm4)
03041 Spliceosome [BR:
dfa03041
]
DFA_02782 (lsm4)
Messenger RNA biogenesis [BR:
dfa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
DFA_02782 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
DFA_02782 (lsm4)
Spliceosome [BR:
dfa03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
DFA_02782 (lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF5746
Med3
GRP
Motif
Other DBs
NCBI-GeneID:
14877195
NCBI-ProteinID:
XP_004362390
UniProt:
F4PIA5
LinkDB
All DBs
Position
Unknown
AA seq
162 aa
AA seq
DB search
MLPLSLLRTGQGHQIMVELKNGETYNGILVNCDNWMNINMRTVIRTSKDSDKFWKLQGCY
IRGNTIKYITVPDEIIDLVAEEEQKQQQQQQQQLQQQHHHHQDKPMGRGRGSGVGRGRGG
NQNDGNMGRGRGGGGGDQQGSYRGGRGGRGGGSDRGGDRGRS
NT seq
489 nt
NT seq
+upstream
nt +downstream
nt
atgttaccattatcattattaagaactggtcaaggacaccaaattatggttgaattaaag
aatggagaaacatataatggtatattggtcaattgcgacaattggatgaatataaatatg
agaactgtcattagaacatcaaaggatagtgataaattttggaaacttcaaggatgttat
attagaggaaatacaattaaatatattaccgttccagatgagatcatagatcttgttgct
gaagaagaacaaaaacaacaacaacagcaacaacaacaattacaacaacaacatcaccat
caccaagataaaccaatgggtagaggtagaggatcaggtgttggaagaggacgtggcgga
aatcaaaatgatggaaatatgggtagaggtcgtggcggtggcggcggcgaccaacaagga
tcttacagaggtggaagaggtggaagaggtggtggaagtgatagaggtggtgatagaggt
agaagttaa
DBGET
integrated database retrieval system
