Cavenderia fasciculata (cellular slime mold): DFA_03012
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Entry
DFA_03012 CDS
T02668
Symbol
helC
Name
(RefSeq) DEAD-box RNA helicase
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03013
Nucleocytoplasmic transport
dfa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
DFA_03012 (helC)
03015 mRNA surveillance pathway
DFA_03012 (helC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfa03019
]
DFA_03012 (helC)
Enzymes [BR:
dfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DFA_03012 (helC)
Messenger RNA biogenesis [BR:
dfa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
DFA_03012 (helC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Helicase_C_2
DUF6820
DUF1811
Motif
Other DBs
NCBI-GeneID:
14877225
NCBI-ProteinID:
XP_004362619
UniProt:
F4PGD4
LinkDB
All DBs
Position
Unknown
AA seq
460 aa
AA seq
DB search
MSEITSTSTPPPTTTPSTSTTTPSTNEKGEEPIPGLVKSESLLETFDAQLEIEQTNPNSP
LYSIKSFEELGLKPEILKGVYAMGYNKPSKIQENSLPIIIQSSENLIAQSQSGTGKTAAF
TLGMLNCVDETIQEPQTICICPSQELAVQIFEVVKKLGQFTTIKPILVIKEVDLPRTITN
QIIIGTPGRLIDCIGRRQIGLRKMKMLVLDEADHMIGVRGMTEQSERIKDLLPKGIKILL
FSATFSSSVDNYTKQYVPEPRVSIRLKREQLSVDKILQFYIDCESPSNKPHILSDIYAYI
SVGQSIVFVHTIETAKSLANKMREDGHSVSLLFGQGNTTEQRFAELNNFKLGKTKVLITT
NVLARGIDILQVSLVINYDMPLDENERPDPVLYLHRVGRVGRFGRSGVAISLVANEHDKK
KLMNIAEHLQRPVKELKKDEIEQVDEILRGLKDLTPLQSK
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaataacttcaacaagtactcctcctcccactactactccttcaacaagtact
actacaccttcaacaaatgaaaagggtgaagagccaatcccaggacttgttaaatcagag
tcattattagagacatttgatgctcaattggaaattgaacaaactaatccaaattcacca
ttatattctattaaatcatttgaagaacttggtttgaaaccagaaatattaaaaggtgtt
tatgcaatgggatataacaaaccatctaaaattcaagaaaattcattaccaattataata
caatcaagcgaaaatttaatagcacaatcacaatctggtacaggtaaaacagcagcattt
acattgggaatgttgaattgtgtagatgagacgattcaagaaccacaaaccatatgtata
tgtccatcacaagaattggctgtacaaatatttgaagtggtcaagaaattgggacaattt
acaacgatcaaaccgattctagtcattaaagaggtggatttacctcgtacgattaccaac
caaatcattattggaacacccggtcgtttgattgattgtattggtcgtcgtcaaattgga
ttgagaaagatgaaaatgttagtgttggatgaagcagatcatatgattggtgtcagagga
atgacagagcaatctgaacgtatcaaggatctcttgccaaagggtatcaagatcctctta
ttctctgccaccttttcatcgtctgtagacaattacaccaaacaatatgtaccagaacca
agagtatcaattcgtctcaaacgtgaacaattgtcagtcgataaaatacttcaattctat
atcgactgtgaatcaccttcaaacaaaccacacatcctttcagatatctatgcttatatt
agtgttggtcaaagtattgtttttgttcatacaattgaaacagcaaaatcattagcaaat
aaaatgagggaagatggacactcggtatcattattatttggacaaggaaatacaacggaa
cagagatttgcagaacttaataatttcaagttgggaaaaacaaaggtgttgattactacc
aatgtgttggcacgtggcattgatattcttcaagtgtcattggtcatcaattatgatatg
ccattggatgagaatgaacgacccgatccagtactctatcttcatcgtgttggtcgtgtt
ggtagatttggtagatcgggtgttgccatctcactcgttgccaatgaacacgacaagaag
aaactaatgaacatagcagaacatttacaacgtccagtcaaagaattgaaaaaagatgaa
atagaacaagttgatgaaatcctcagaggtttaaaagatttaactcctcttcaatcaaaa
taa
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