Cavenderia fasciculata (cellular slime mold): DFA_03176
Help
Entry
DFA_03176 CDS
T02668
Symbol
upf2
Name
(RefSeq) eukaryotic initiation factor 4 gamma
KO
K14327
regulator of nonsense transcripts 2
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03013
Nucleocytoplasmic transport
dfa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
DFA_03176 (upf2)
03015 mRNA surveillance pathway
DFA_03176 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfa03019
]
DFA_03176 (upf2)
Messenger RNA biogenesis [BR:
dfa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
DFA_03176 (upf2)
mRNA cycle factors
P-body specific factors
DFA_03176 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
14877060
NCBI-ProteinID:
XP_004362782
UniProt:
F4PGU7
LinkDB
All DBs
Position
Unknown
AA seq
1387 aa
AA seq
DB search
MSSKPSPVYIPKAKSPAAAADTTQSSSSSSTPSAPKPTPAPAASSTSTTTANGKSPTEKK
EKKVYVKKEKPPRTSSSSSSQDKEQKEKDSTTSTTSTTSTTAPKDVKERPPKKPREPKPK
KAAASVPTTTSSPPDAVASTSTTTTTTSTTSPSVSTTTTTPSKPAPKPKKERPSKPPKKD
EIKKDDDNKPTVATSKPPKKETREPKEPREPKPKREAKPKAIFTKKDSEAAKEEERKKKE
EQERLEKERKEVEEKKRLEELEKKKIEEEKRLEEERLEKEKQEKLNQERLQRQREELQLI
SQIRSENQMVNKNPSSRNALMAKLDSSFKRISNFLKKMKVISDIENKESLLNEIAQLNLQ
QYTTEIVPSIIKSSFKTTDIPVIVRIFSLLHQRYEGVDACIQESLFQLFQPLGLSISEPE
AERNQKIVKRRNAIRLILDLYYVDILHSFSPVLKLVGKLANSQTFEQDKELGYPSLVVLS
SFVRPITFYIGLNKNKNQNLGLPDIYSNILSIEEQTAIKDIITGYYTKICDCIQKEQQLL
REKEKEMRSILVTKGELTEAFQASYDLMRKNYEKLITNATTYADLIGAPLPSNDYSTKSE
NSQNDQKQSDQLETFSSPFETDEQKKFYEELSPLPKDDKKPSAATSTTTTITTTTSSPPV
TPSTTTTTEETVVEKKPELTDAEKKAIKAKNNLMFEELIQKLKSSTLKISTIDQAINMYL
KLNLKPTKKKILTNILTQSRQDQIPFFARFVATLNQSSQNRDFVQGLCQHIDEELTSLIE
KKEQIHLAVKIRNISFIGELIKFKVLPNTTAFNYLKLCFDDFTHHNIDIACTLLEVCGRY
LYRLAESQFRLRNMLDIIIRHKNAKVMEIRQESMIDNAYLTCRPAIVITKQVDPVKQFAK
FLIFRFLADDATAKTVCEKLYQFPWPSCQEYLCKYFLAVQKQKFGNIYLVADILYRLKRC
YPSFVRTVVWRLLEDITVGFERNDFSQNQKRIMQATLFGELYNSCLLDTYHIFSLLIGAL
EYGYSTIHLFPVNADVEKEILMNRYTPKVDEFDAPNDSFRVRFICSLILVCKDCFYDEEI
ANQLKPYLVFLQRYAFTKQLSMELDFMLTDCMSIVPGMKVYKTWEEANEECLKIGSIFSL
LNVNNKTNKKKTEKDVAKTNANGDDEDDGQSLSRKGHRRKEQVMAASEEDEKAKTEETLQ
REKEEEAAYLFYKQQQEETEEDLEFMREFKKTMQESVDSRKNEKIKVSLPSIHHNIGSNS
PTNNDISPPLAPMIMPMMMMMGGGSERGIGGSLSPQPSTSSSFQQQQQSPIKLPTLSGGG
FGEGMINSEGKRVPFQLLLKKGNRSTAKTIDIPEDTEFVAQIKLAKEEEERVIQENKKLV
LKMTQNT
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcaaaccctcacctgtgtatattccaaaggctaaatcgccagctgctgcagcc
gatactacacaatcatcatcatcatcatcaacaccatcagctcctaaaccaacaccagca
ccagctgcttcaagtactagtactactactgcaaatggcaaatcaccaacagaaaagaag
gaaaagaaggtctatgtaaagaaagagaaacctccaagaacatcatcttcatcttcatca
caagacaaggagcaaaaagagaaagattctactactagtactactagtactacatctact
acagcaccaaaagatgtaaaggaaagaccaccaaagaaacctagagaacctaagcctaaa
aaggctgctgctagtgttcccactactacatcttctccaccagatgctgttgctagtaca
tcaactactactactaccacttcaacaacatcaccttcagtatctactactactactact
ccatcaaaaccagcaccaaaaccaaagaaagaaagaccttcaaaaccaccaaagaaggat
gaaatcaagaaagatgatgataataaaccaacagtagctacatccaaaccaccaaagaaa
gagacaagggaaccaaaagagccaagagaacccaaaccaaaaagagaagcaaaaccaaaa
gcaatctttacaaagaaggattcagaggctgccaaagaagaggaaagaaagaaaaaagag
gaacaagaacgattggaaaaggaacgtaaagaggtcgaggagaaaaagagattagaagag
ctagagaaaaagaaaattgaagaggagaaaagattggaagaagaaagattggaaaaagag
aaacaagaaaagttaaatcaagaaagattacaaagacaaagagaagaattacaattaatc
tcacaaattagatcagagaatcaaatggtcaataagaatccatcatctagaaatgcattg
atggccaagttggacagtagttttaagagaatatcaaactttttgaaaaagatgaaagtg
atttcagatattgaaaacaaggaatcattgctcaatgagattgcacaactcaatctccaa
caatacaccaccgagattgtaccatcgattataaagtcatctttcaagacgaccgatatt
ccagtgattgttcgtatcttttcactgttgcatcagagatatgaaggtgtcgatgcatgt
attcaagagtcgttgttccaactcttccaaccacttggactatcgattagcgaacccgaa
gctgaacgcaaccaaaagattgtaaagagacgtaatgcgattagattgatactcgatctc
tactatgtcgacattctccactctttttcaccggtcctcaaacttgtaggaaaactagcc
aactctcaaacatttgaacaagacaaagaacttggttatccatcattggtcgtattatct
agttttgttcgtccaattactttttatattggtttaaacaaaaataagaatcaaaattta
ggattaccagatatttattcaaatatattgtctattgaagaacaaacagctatcaaggat
ataataactggttactatacaaagatttgtgattgtattcaaaaggaacaacaattatta
cgtgaaaaagaaaaggaaatgagaagtatattggtaacaaagggtgagttgacagaggca
ttccaagcatcgtatgatctaatgagaaagaattatgaaaagttaattaccaatgctacc
acttatgctgatctcattggtgcacctctaccatcaaatgattattctacaaagtctgaa
aactcacaaaacgatcaaaaacaatccgatcaattggaaacttttagttcaccatttgaa
actgatgaacaaaagaaattctatgaagaattatcaccattaccaaaagatgataagaaa
ccatcagcagctacatcaacaactacaactattactacaacaacatcttcaccaccagtt
actccttctactaccacaacaacagaagagacagttgttgaaaagaaaccagaattgaca
gatgcagagaaaaaggcaattaaagcaaagaataatttaatgtttgaagagttgattcaa
aaattaaaatcatcaactttaaagatttcaactatcgatcaagccatcaacatgtatctc
aaacttaatcttaaaccaactaaaaagaagattttgaccaatattctcactcagtctaga
caagatcaaatcccattctttgcaagatttgttgctactttaaatcaatcatctcaaaat
agagattttgttcaaggactttgtcaacatattgatgaagaattgacaagtttaattgaa
aagaaagaacaaattcatttagctgttaaaattagaaatatttcatttattggagaatta
attaaatttaaagtattaccaaatacaacagcatttaattatttgaaactttgttttgat
gattttactcatcataatatagatattgcttgtacattattggaagtttgtggtcgttat
ctttatagattggcagaatcacaatttagattaagaaatatgttggatattataattaga
cacaagaatgcaaaggtaatggaaattagacaagaatcaatgattgataatgcatatctt
acatgtagaccggctattgtaatcaccaaacaagttgatccagtcaaacaatttgcaaag
tttttgatattccgattcttggccgatgatgctactgcaaagactgtatgtgaaaagttg
tatcaattcccatggccatcgtgtcaagagtatctttgcaaatactttttggcagtacaa
aagcaaaagtttggcaatatttatttggtggctgatattctctaccgtctcaaacgttgt
tacccctcgtttgtgcgtactgtagtatggcgtctgttggaggacattacggttggattt
gaacgcaacgactttagccaaaaccaaaagagaatcatgcaggctactttgtttggtgag
ttgtacaactcgtgtctactcgacacttatcatatcttttcattgttgattggtgccctc
gagtatgggtacagtactattcacttgttcccagtcaatgcagatgttgaaaaggagatt
ttgatgaatcggtatactcccaaggtcgacgagtttgatgcacccaacgacagcttccgt
gtgcgtttcatctgcagtctcatcctcgtctgcaaggactgtttctacgacgaagagatt
gccaaccagctcaaaccatatctcgtgtttttacagcgttacgcattcaccaagcagctg
tcgatggaactcgactttatgctcactgactgtatgtcgatcgtacccggtatgaaggtc
tacaagacatgggaagaagccaacgaagaatgtctcaaaattggtagtatctttagtttg
ctaaacgtcaacaacaagaccaacaagaaaaagacggaaaaggatgttgccaagaccaac
gcaaacggcgacgatgaagacgacggacaatctttgtcgcgaaagggtcaccgaagaaag
gagcaagtcatggctgcctctgaggaagatgaaaaagccaagaccgaggagacactacaa
cgcgaaaaggaagaagaagcagcttacctcttttacaaacaacaacaagaagaaacagaa
gaggatttggaattcatgagagagtttaagaaaacaatgcaagaaagtgtcgattcgaga
aagaatgaaaagatcaaagtcagtttaccatcgattcatcataatattggatcaaatagt
cctacaaataatgatatttcacctccattggctccaatgataatgccaatgatgatgatg
atgggcggtggtagtgaaagaggtattggtggtagtttatcaccacaaccatcaacatca
tcatctttccaacaacaacaacagtcacccattaaattacctacactttcaggtggcgga
tttggagaaggaatgatcaattcagaaggaaaaagagtaccattccaattgttactcaaa
aagggtaatagatcaacagccaaaacaatcgatattccagaagacactgaatttgttgct
caaattaaattggccaaagaggaagaagaaagagtgattcaagaaaacaagaaattggtt
ttaaagatgactcaaaatacttaa
DBGET
integrated database retrieval system
