Cavenderia fasciculata (cellular slime mold): DFA_03256
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Entry
DFA_03256 CDS
T02668
Symbol
pabpc1B
Name
(RefSeq) RNA-binding region RNP-1 domain-containing protein
KO
K13126
polyadenylate-binding protein
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03015
mRNA surveillance pathway
dfa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
DFA_03256 (pabpc1B)
09123 Folding, sorting and degradation
03018 RNA degradation
DFA_03256 (pabpc1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfa03019
]
DFA_03256 (pabpc1B)
03041 Spliceosome [BR:
dfa03041
]
DFA_03256 (pabpc1B)
Messenger RNA biogenesis [BR:
dfa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
DFA_03256 (pabpc1B)
mRNA cycle factors
Stress granule specific factors
DFA_03256 (pabpc1B)
Spliceosome [BR:
dfa03041
]
Complex C
Other components
Complex C specific factors
DFA_03256 (pabpc1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
PHM7_cyt
Motif
Other DBs
NCBI-GeneID:
14877539
NCBI-ProteinID:
XP_004362861
UniProt:
F4PH26
LinkDB
All DBs
Position
Unknown
AA seq
748 aa
AA seq
DB search
MVSSIENTTESVVSLPDNAAVENLSNSTPVNAASSSSSSSSSPTTTSSSASSTNHGGHHH
HHHNNSNGTATNTNTNGHNHNNHHHNNGHYAPHPHMIMHHPMMMQPYHGPMHPAVGHYQS
PPPPPPLQFTSLYVGDLSQEVNELILAELFSKVGRTAVASIHVCRDSATLRSLGYAYVNF
YNSVDAERALDTLNYSLILGRPCRIMWSHRDPTKRKSNVGNIFVKNLEKNVDNALLFDTF
STYGNILSCKIEYEKGISKGYGYVHFENQESSEQAILKVNGTILLGKPIIVEPFVSKVER
FKEKKNENKLFIKNIDENVTSEMLQQELSRFGEIESCNIRTDPTGKPKGLAFVEFKTSED
AQALLESTEAITILSKQITFDRIKNKVERSIEKNQKLINELNNNNNNHNNNNINHHINSS
SLQQNGSTSQQQQQNLTLFINNIDMEVDKEIIREEFAKHGNILGIKIKSRGFAFLTYSTQ
EEAAVAIEKMNGYVFGTKALVVSLSNSRKEKRIPSDSLQGPNPYMYMPYVRGPYQYQQAH
YYPAAAAQQQQQQQQQLSPSQQQQNSQQPRGKVPFKSNRPISLNPNNQQQPNSNMIKPST
NGYSHHQQQPRKPRSPTNTPYNNTTTASSPATKRDEQPSRSPSQEESSPSLNVEELKKMT
LEDVRDAVGSFIYNIVSEKESDKAPKITGMILSQAIQQGFDSLIDLLDQTKLSEKIQEAI
VVLNSQDIPSSNNDQTTTAAAAVEVAAN
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atggtttcatcaattgaaaatactactgaatctgtcgtatcacttccagacaatgctgca
gttgaaaacctatccaactcaactccagtgaatgctgcttcgtcgtcgtcgtcgtcgtca
tcgtcgcccaccaccacctcctcctctgcctcgtctacgaaccatggtggtcatcatcac
caccatcacaacaactcgaatggcactgctaccaacaccaacaccaacggtcacaaccac
aacaaccatcatcacaacaatggacattacgccccacacccacacatgatcatgcatcat
ccaatgatgatgcaaccataccacggtccaatgcatccagcagttggtcactaccaatcg
ccaccacctccacccccactccaattcacttcactctacgttggtgatctatcacaagag
gtcaatgaactcattttggccgaactcttttcaaaggttggacgcacagccgttgcctct
attcatgtctgtcgtgattctgcaaccctccgttcacttggatacgcctatgtcaatttc
tacaactctgtggatgccgagcgtgcactcgacaccctcaactactctcttattctcggt
cgtccatgccgtatcatgtggtcacaccgtgacccaaccaagcgtaaatccaatgttgga
aacatctttgtcaagaatctcgaaaagaacgttgacaatgctctcctctttgacactttt
agcacctatggcaacatcctttcatgcaaaatcgaatatgaaaagggtatctcaaagggc
tatggttatgttcattttgaaaatcaagaatcttctgaacaagctatccttaaagttaat
ggtaccattcttttaggtaaaccaattattgttgaaccatttgtatcaaaggttgaaaga
ttcaaggaaaaaaagaatgaaaacaaattattcattaaaaatattgatgaaaatgtaacc
tctgaaatgttgcaacaggaattgtctagatttggtgagatagagtcatgtaatattaga
accgatccaaccggaaagccaaagggattggcatttgtcgaattcaaaacatcagaagat
gcccaagcacttttagaaagtaccgaggccatcaccatcctttcaaagcaaatcaccttt
gatcgtatcaaaaacaaggtcgaaagatcaatcgaaaagaatcaaaaattaattaacgaa
ttaaataacaataataacaatcataacaataataacatcaatcatcatatcaactcttct
tctttacaacaaaacggatcaacttcacaacaacaacaacaaaacctaaccttgtttatt
aataatattgacatggaagttgataaagagattattcgtgaagaatttgccaaacacgga
aacattttgggcatcaagatcaagtctcgtggctttgccttcctcacctactcgactcaa
gaggaagctgctgttgccattgaaaagatgaatggttatgtctttggcacaaaggcattg
gttgtatccttgtccaacagtcgtaaagagaaacgtattccatctgactcccttcaagga
ccaaatccctacatgtatatgccatatgttcgtggtccatatcaataccaacaagctcac
tattatccagctgctgctgcccaacaacaacaacaacaacaacaacaattatcaccatct
caacaacaacaaaactcacaacaaccacgtggaaaagttccattcaaatcaaatcgtcca
attagtttaaatccaaacaaccaacaacaaccaaatagcaatatgatcaaaccatcaacc
aatggatatagtcatcaccaacaacaaccaagaaaaccacgtagcccaaccaatacccca
tacaacaacaccaccaccgcctcctcaccagccaccaagagagatgaacaaccatcccgt
tccccatcacaagaagaatcttcaccatcactcaatgttgaagaattaaagaaaatgaca
ctcgaagatgttagagatgccgttggatcatttatttacaatatcgtttcggaaaaggag
tctgacaaggcacccaaaatcaccggaatgatcttgtcccaagccatccaacaaggtttt
gattctttgatagaccttttggatcaaaccaagctttctgaaaagatacaggaagctatt
gtcgtcttgaactcacaagacatcccatccagcaacaacgaccaaacaaccactgctgcc
gctgctgtcgaagttgctgccaattaa
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