Cavenderia fasciculata (cellular slime mold): DFA_04067
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Entry
DFA_04067 CDS
T02668
Symbol
srrm1
Name
(RefSeq) putative RNA splicing factor
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03013
Nucleocytoplasmic transport
dfa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
DFA_04067 (srrm1)
03015 mRNA surveillance pathway
DFA_04067 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfa03019
]
DFA_04067 (srrm1)
03041 Spliceosome [BR:
dfa03041
]
DFA_04067 (srrm1)
Messenger RNA biogenesis [BR:
dfa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
DFA_04067 (srrm1)
Spliceosome [BR:
dfa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
DFA_04067 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
14870485
NCBI-ProteinID:
XP_004366477
UniProt:
F4Q172
LinkDB
All DBs
Position
Unknown
AA seq
534 aa
AA seq
DB search
MDASGFFRGTSSEQDNRFADKEKKLLKVMKFPPHFNTKLDITKVNLPTFRKWITKQVIEM
LSFEDDVLINYVADLVEKNVDPKIMQIRLTGFLEDNTDSFMNKLWKLLLDAQDSVAGIPE
EFLKDAELMSSRAMAEENRIKEALDRAQARMGNTSRVASNSVSGGGGSSGNNQQTNMLMQ
QQQQLLQLQQLQQQEENLKQLQAQLLLQQTNPAAAAAAASVSTHKQSFSSVVGDVKPVPP
TSSSSSSYGLQKRKETEDYHHSSSSSSMANLEDDRKYRRFDTGRDRYHHDDYNNNRDNRR
DGGSYDRYHYGGGGDNRDRYDDRRGGDRYDDRRGGYDDRRDRYDDRRGGGGDRYDDRRGG
GVDRYDDRRGGGDRYNDRRGGGDRYDDRRDRYDDRRDRYDDRPSSSSSSSSSYSNRDKDR
YYNDRDRESTRKDYDRKDRYDDRDRDRDRSRDRSKERYSSSSSKKEDRGRSRDRVKEEDE
KENNNDTDNNNNDNSRQESSRSRSRSKSQDNNNDDDQNDNNTNKYSDDENVKEE
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atggatgcaagtgggttttttagaggtacatcctcggaacaagacaatagatttgcagat
aaagaaaagaaactacttaaagtaatgaagtttcctcctcattttaacactaaactagac
ataactaaagttaatttacctacttttaggaaatggatcacaaaacaggtaatcgaaatg
ctctcttttgaagatgacgttctaattaattatgtagctgatttagttgaaaagaatgtt
gatccaaagattatgcaaattcggttgacaggattcttagaggataatacagactctttt
atgaacaagttgtggaaattgctgttggacgcacaagattcggtggctggtatccccgag
gaattcttaaaggatgctgaattaatgtcgtcgagagcaatggcagaggagaatagaatc
aaagaggcattggacagagcacaagcaagaatgggaaatacaagtcgtgttgctagtaat
agtgttagtggtggtggcggtagcagtggtaataaccaacaaacaaacatgttaatgcaa
caacaacaacaactcttacaactacaacaattacaacaacaagaggagaatttgaagcaa
ttacaagcacaactattactccaacaaaccaatcctgccgctgctgctgctgccgcatcg
gtatctacacacaaacaaagttttagtagtgtggttggagatgtcaagcctgttccacct
acttcttcctcctcctcctcgtatggactacaaaagagaaaagaaacagaagattatcat
cattcatcatcatcatcgtcgatggccaatttagaagatgatagaaaatatagacgtttt
gatactggacgcgatagatatcatcacgacgactacaacaataacagagataatagaaga
gatggcggatcgtacgacagatatcattacggaggcggcggcgacaatagagatcgatat
gatgatcgaagaggaggtgacagatatgacgatcgaagaggtggatatgatgatcgcaga
gatcgatatgacgaccgaagaggtggaggtggtgacagatacgatgaccgaagaggtggt
ggagttgacagatatgatgaccgaagaggtggtggtgacagatacaatgaccgaagaggt
ggtggtgacagatacgatgacagaagagatagatacgatgacagacgagatagatatgat
gatagaccatcctcctcctcctcatcctcatcgtcatacagtaaccgcgacaaggataga
tactataacgatagagacagagaatcaacaagaaaggattatgatagaaaggatagatat
gatgatagagatcgtgacagagacagatctagggatagatcaaaggaaagatactcatca
tcatcttcaaaaaaagaggatagaggtagatcaagagatagagtaaaagaagaggatgaa
aaggaaaacaataacgacactgacaacaataacaacgacaattctcgtcaagaaagtagt
agatcaagatcaagatcaaaatcacaagataataataatgatgatgaccaaaacgacaac
aacaccaacaagtacagtgacgacgaaaatgttaaagaagaataa
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