Cavenderia fasciculata (cellular slime mold): DFA_04265
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Entry
DFA_04265 CDS
T02668
Symbol
uap56
Name
(RefSeq) DEAD/DEAH box helicase
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03013
Nucleocytoplasmic transport
dfa03015
mRNA surveillance pathway
dfa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DFA_04265 (uap56)
09122 Translation
03013 Nucleocytoplasmic transport
DFA_04265 (uap56)
03015 mRNA surveillance pathway
DFA_04265 (uap56)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfa03019
]
DFA_04265 (uap56)
03041 Spliceosome [BR:
dfa03041
]
DFA_04265 (uap56)
Enzymes [BR:
dfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DFA_04265 (uap56)
Messenger RNA biogenesis [BR:
dfa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
DFA_04265 (uap56)
Spliceosome [BR:
dfa03041
]
Complex C
Other components
EJC/TREX
DFA_04265 (uap56)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
DFA_04265 (uap56)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
14874540
NCBI-ProteinID:
XP_004359998
UniProt:
F4PP34
LinkDB
All DBs
Position
Unknown
AA seq
426 aa
AA seq
DB search
MADPDVDINELAEYEESDPEDNVQETNGGSKNVSAKDTHVAMHSSGFREFLLKPELERVI
GDCGFEHPSEVQNECIPQAILGHDVICQAKSGMGKTAVFVLSLLQQIDKNPSGVVALVLC
HTRELAYQICDEFDRFVKYMPQVKTAVIYGGIPINTQKELLRDKQPNIVIGTPGRVLALA
TDKSLSLKNVKHFVLDECDSLLEALDMRKDVQKIFKATPASKQVMMFSATLSESIRSVCK
KFMNHPFEIYINDGSKLTLHGLQQYFIKLNEDQKNKKLVDLLDGLDFNQIVIFVKSVERA
KLLNQILSDVGFSSICIHRGLDQPERIEQYRKFKNFQSRVMVATNIFGRGIDIERVNVVI
NYDMAESPDTYLHRVGRAGRFGTKGLAISFITSPDDQTTLDTVQSKFVVSVKDLPDTIDP
STYMSG
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggccgacccagatgttgatatcaacgagcttgccgaatacgaagagagtgatccagaa
gacaacgtacaagaaaccaacgggggttccaagaatgtctctgcaaaggatacccatgtt
gccatgcacagcagtggttttagagagttcctcttaaagccagagttggaaagagttatt
ggagattgtggttttgaacatccatccgaagttcaaaatgaatgtattccacaggccatc
ctcggtcacgatgtcatctgtcaagccaagtctggtatgggtaagactgccgtctttgtt
ttgtctcttcttcaacaaattgacaagaatccatctggcgttgttgctcttgttttatgt
catactagagagcttgcctatcaaatttgtgatgaatttgatagatttgtcaagtatatg
ccacaagtcaagactgccgtcatctatggtggtatcccaatcaacacccaaaaggaactc
ctcagagacaagcaaccaaatattgttatcggtactccaggtcgtgtcctcgcacttgcc
actgacaagtcactcagtctcaagaacgtcaagcactttgtacttgatgaatgtgacagt
ttgttggaagctttagacatgagaaaggatgtccaaaagatcttcaaggctaccccagcc
tccaagcaagtaatgatgttttctgctactcttagtgaaagcattcgttcagtttgcaag
aaatttatgaatcatccatttgaaatttatatcaatgatggtagtaaattaactttacat
ggtctccaacaatactttatcaaactcaatgaagaccaaaagaacaaaaagttggtcgat
ttgttggatggtttagatttcaaccaaatcgtcattttcgtaaagagcgtagagcgtgct
aaattactcaaccaaattctctctgacgtcggtttctcttcgatctgtattcatcgtgga
ttagatcaaccagaaagaattgaacaataccgtaaatttaagaacttccaatctcgtgtc
atggttgccaccaacatctttggtagaggtattgatattgaacgtgtcaatgtcgtcatc
aactatgatatggccgaatcaccagatacttacctccatcgtgtcggtcgtgccggtcgt
ttcggtaccaagggtcttgccatttctttcatcacctcgccagatgaccaaaccactctt
gacactgtccaatccaagtttgtcgtctctgtcaaggatctcccagataccattgatcca
tctacttatatgagtggttaa
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