Cavenderia fasciculata (cellular slime mold): DFA_04752
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Entry
DFA_04752 CDS
T02668
Symbol
vps39
Name
(RefSeq) tetratricopeptide-like helical domain-containing protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
DFA_04752 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dfa04131
]
DFA_04752 (vps39)
Membrane trafficking [BR:
dfa04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
DFA_04752 (vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CNH
Vps39_1
zf-Vps39_C
Clathrin
TPR_Vps41
DUF2175
Zn_ribbon_19
Motif
Other DBs
NCBI-GeneID:
14874381
NCBI-ProteinID:
XP_004360473
UniProt:
F4PQF9
LinkDB
All DBs
Position
Unknown
AA seq
859 aa
AA seq
DB search
MNSFTSVNVIDKIQQKIECIDTWEFRGVKRLLLGTYEGYVLIYEVTERPNVSIKLVDTKQ
LSRKPIQQMTVLEPYNMLVILTDGDLKVFDLVNGFSQRTPLTKAKGCNVYAVAQNGSSLS
LCAAVKKKLMLYNWDGTDFLESKEFNIPDITKALDYRGDSIVVCFKKAYNIINTIDGSVH
NVDTEKISFATFFQNNEFLIVKNNMSFFINTDAVPTRKYALTWSDSPTNLTIYYPFVLSI
EARQVEIQIVPESKTNSKAISQTLFINGGKAITSKKDIYVASNSTVWRLVQVPILELVDQ
LVTNSEFETAINVLTNSPDTLPGKRDKLSKIKISAAYHQFSREQYISAMELFLSASFDPL
KVISLFPGFLPQLLQEKLSVPIQTKDLEKNEDALGALDAFLVSIRKELQKPDRPPYNLNP
PELHNSGYDLPTLIDTTLLKVYIKLKPNLISVFFNLKNSLHIEETQRVLIEEKKFTELVT
FYQSKAMHREALSLLVKNSGPKETIAYLCTLGKQHITIILEQSKWVLQSCPDEALLIFTT
ERKEKDELPPDQVIPHISAHARSLLMEYLECIINNPIHPDKTPDFHNALIFEYLTKINTF
IRHSPAPRAQETPAASELGNLREIRLKLINFLQTSKFYLPEKMLSRFPVDDLFEERAILL
SKIGRHEQALAIYAHKLKNFKMAEEYCDRVYNRDSQDSRDVYLNLLNVYLKPEGTDSKPL
IGPALALLNKHYRSINTPNALGLLPLETSIKELYPFFESVIRDNTKTKRDNQVIKNLFKA
ENVKIKEELIHLRSGVIKITDDLICPYCNKRFVGTNAFAATPSGTAIHYVCFQNQQNQKN
LMNGSNNNANNFQPGSYEY
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgaattcatttacctctgttaatgtaatcgataaaatacaacaaaaaatagaatgtatt
gatacatgggagtttagaggtgtaaagagacttttacttggtacttatgaaggttatgta
ttgatatatgaggtcactgaaagaccaaatgtatcaattaaacttgttgatacaaaacaa
ttatcaagaaaaccaattcaacaaatgacagtattggaaccatacaatatgttggtgatc
ttgacagatggtgatctcaaagtatttgatttggtgaatggattttcacaaagaacacca
ttgaccaaggcaaagggatgcaatgtgtatgccgtcgctcaaaacggatcttcactcagt
ctctgtgcagctgtcaagaaaaagttgatgttgtacaattgggatggcactgatttcctc
gagtctaaagagtttaacataccagatatcaccaaagcattggattatcgtggcgactcg
attgtcgtttgtttcaaaaaggcttataatattatcaacaccatcgatggtagtgttcac
aatgttgatactgaaaaaatatcatttgctacctttttccaaaacaatgaatttttaatt
gtaaagaataatatgtcattctttataaatacagatgcagtaccgacaagaaaatatgca
ttaacatggtcagattcaccaaccaatttgacgatttactatccatttgtactttcgatt
gaagcacgtcaagtggagattcagattgttccagagtccaagacaaactccaaggccatt
tcacagacactctttattaatggtggtaaggcgatcacgtcgaaaaaggatatctacgtg
gcctccaactctaccgtgtggagacttgtacaggttcccatcctcgaactggtcgatcag
ttggtcaccaactcagagtttgaaacagccatcaacgtactcacaaattcaccagacact
ttgccaggcaagcgcgacaagttgtccaagatcaaaatctcggctgcctatcatcaattc
tcaagagagcaatacatcagtgctatggaactcttcctcagtgcttcatttgatcctctc
aaagtcatttcactctttcctggtttccttccacaacttcttcaagaaaaactttcagtt
ccaattcaaacaaaagatcttgaaaaaaatgaagatgcattgggagcattggatgcattt
ttagttagtattagaaaagaattacagaaaccagatagaccaccatataatttaaatcca
cctgaattacacaactctggttatgatcttccaacattgattgataccactttgctcaaa
gtctatatcaaattaaaaccaaatttgatatcagtctttttcaatctcaaaaacagttta
cacattgaagagactcaacgagtgttgattgaagaaaagaagtttacagaactcgttaca
ttctatcaatccaaagctatgcatcgtgaggctctttcattgttggtcaagaatagtgga
ccaaaggaaaccattgcctatctctgtacattaggaaaacaacatataaccattattttg
gaacaatctaaatgggtacttcaatcttgtcctgatgaagctttattaattttcacaact
gaaagaaaagaaaaagatgaattaccacctgatcaagttattccacatattagtgctcat
gcacgttcattgttgatggaatatttggaatgtattattaataatcctattcatccagac
aaaacccctgatttccacaatgcactcattttcgaatatctcaccaagatcaacaccttt
attagacattcaccagctccaagagctcaagaaacacctgctgcctctgaattgggcaat
cttcgtgaaattagattaaagttgatcaactttttacaaacttctaaattttatctacca
gaaaaaatgttatcaagattccctgttgatgatttatttgaagaaagagccattttatta
agtaagattggtagacatgaacaagcattggcaatttatgcacataaacttaaaaacttt
aagatggcagaggaatattgcgatagagtatataatcgtgatagtcaagactcgagagat
gtctatctcaaccttttaaatgtatatttgaaacctgaaggaaccgattccaaaccactg
attggaccagcacttgctctactcaacaaacactatcgatcaatcaacactccaaacgca
ctcggcttgttgcctcttgaaacctccatcaaagaactctatccatttttcgaatctgtc
attcgtgacaataccaaaacaaaaagagataatcaagttattaaaaatttatttaaagct
gaaaatgtaaagattaaagaggaattaattcatttaagatcaggtgtaattaaaattaca
gatgatttaatttgtccttattgcaataagagatttgttggtacaaatgcatttgctgct
actccaagtggtactgcaattcattatgtttgtttccaaaaccaacaaaatcaaaagaat
ttaatgaatgggtcaaataataatgcaaacaatttccaacctggatcgtatgaatactaa
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