Cavenderia fasciculata (cellular slime mold): DFA_05237
Help
Entry
DFA_05237 CDS
T02668
Symbol
repE
Name
(RefSeq) UV-damaged DNA binding protein1
KO
K10610
DNA damage-binding protein 1
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03420
Nucleotide excision repair
dfa04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
DFA_05237 (repE)
09124 Replication and repair
03420 Nucleotide excision repair
DFA_05237 (repE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dfa04121
]
DFA_05237 (repE)
03400 DNA repair and recombination proteins [BR:
dfa03400
]
DFA_05237 (repE)
Ubiquitin system [BR:
dfa04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
DFA_05237 (repE)
DNA repair and recombination proteins [BR:
dfa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
DFA_05237 (repE)
TCR (transcription coupled repair) factors
Cul4-CSA complex
DFA_05237 (repE)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_NWD2_C
EssA
Motif
Other DBs
NCBI-GeneID:
14875377
NCBI-ProteinID:
XP_004360958
UniProt:
F4PNQ4
LinkDB
All DBs
Position
Unknown
AA seq
1116 aa
AA seq
DB search
MSYNFITTVHKPTAVTESVTGHFTSPNEKNLIISKCTKIEIFTLAPEGLVPILETNIYGR
ISNMKLFSVHGEKQELLFILTERFKYCVLSYDAEKKELITRASGEADDSIGRPADSGQLA
IIDPDSKVLALHLYEGLLKIIPIEKGTLKTAYNVRLQELQVIDIVFIAPTNNQPTLAVLS
KDTRDSKNVNTYILSLKDKELIESANTWAQSNVEDGASKLIAHQNGLLVVGETLVSFLKP
TSSPRTIPIAGTRITAVGRVDKDKFLFGDHLGQLYFLLLSQNEKELRFEKLGETCTASTI
SYLDSGVVFIGSALGDSQLIRLLSDRDPNTNSYVTVLDTFANLGPIPDFCLVDIEKQGQN
QIVACSGGFKEGSLRVIRNGIGITEQASIDLPGIKAIWSLARGSDRYLILSFISSTKVLE
FQGEDIEETEIAGFDLQSPTLYCGNVADKQILQISTSGIYLVDHETNLNYDVWKPSSGSI
NLASHQGNQILISFGKTLIYFEIKDQKIIKLKELEMEFEISCLDISSFQVGERSKICVVG
LWTDISLRILSLPTLEQVHKENLGGEVIPRSVLMIAFEGINYLLCSLGDGHLFNFIVDTI
NNTLHERKKVSLGNQPIILSKFQLKGTVNVFASSDRPTVIYSSNRKLLYSVVNLKVVVGV
CSFDSEVFRDCIAIATDKTLSIGHIDDIQRLHIKKIDLGGEFARRIAHVEAHQCYALITI
RPDESGLEESETEQNFIRIVNQQTFETIVKYPLKENEYGWTILSTNFKETLTSNSSSTSS
STSTTSTTSTSGRRRLPTTTTTTTTSNDEEEQSEYIVVGTTYHCHDRKECGRILVFKMID
SRLILLDETTVRGSIFCMIAFNGQLLVAINKSVHRYTWSGDSSSGKLTGEEIYGGHTASL
YLAGRGDFVLVGDMMKSMALLQASGKDVKELSRSSQPFWLTGLTFIDDDTYLGSDNSYNL
ILMKKNTETANEVDSQLLDNIGHIHTGEFINRFHHGTLATLTDVDSPKPNSIIFATISGC
IGVISTISKQDYDFFSKLQVGLNRVIRGIGGFSHDRWRSFQNEHISNIESRNFIDGDLVE
QFLHLRHDKMLEVTKDMDISIEDTYKKIETTMQSIR
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgtcatacaactttataacaactgttcacaaaccaacagcagttactgaatcagtaaca
ggtcattttacatcaccaaatgaaaagaatttgatcatctctaaatgcacaaagattgaa
atatttactttagcacctgaaggacttgttcctattttggaaactaatatctatggtaga
atttcaaatatgaagttgtttagtgttcatggagaaaaacaagaattattatttatattg
acagaaagatttaaatattgtgtattatcgtatgatgcagaaaagaaggaattgataaca
agagcaagtggagaggctgatgatagtattggtcgacctgccgactctgggcaattggca
atcatcgaccccgatagcaaagtattggcacttcatttgtacgaagggttattaaagatc
attcccattgaaaaggggacactcaagactgcgtacaatgtgagactgcaagagttgcaa
gtcatagacattgtattcatcgcacccaccaacaaccaaccaacactggccgttctctca
aaggacacaagagactctaaaaatgtaaacacctatatcctctcactcaaggacaaagag
ttgattgagagtgccaacacctgggcacagtcaaatgtagaggacggtgcatccaagttg
attgcacaccaaaatggattgttggtggttggcgagacactggtcagtttcctcaaacct
accagctcaccacgcaccatcccgatagcaggtactcgcatcactgcagttggacgagtt
gacaaggacaagtttttgtttggcgaccatttgggacaactctactttttactcttatcg
caaaacgaaaaggaacttcgatttgaaaagcttggtgagacgtgtacggcaagtaccatc
tcctatctcgatagtggtgttgtgtttataggatcggcacttggagacagccagttgatt
cgtctgctctcggatcgtgatccaaacaccaatagctatgtgaccgtcctcgacaccttt
gcaaatctcggacctattcccgacttttgtttggtcgacattgaaaagcaaggacagaat
caaattgtagcgtgttcgggtggattcaaggaaggatcgctccgagtcattcgtaatggt
attggtattaccgaacaggcatcgattgatctaccaggcatcaaagctatctggtcgttg
gcaagaggttccgaccgttatctcatcctctcctttatctcttcgaccaaagtactcgaa
ttccaaggtgaagatattgaagaaactgaaatagcaggattcgatctacaatcaccaacc
ctctattgtggcaatgtcgcagacaaacaaatacttcaaatttcaaccagcggtatctat
ttggtagatcatgaaactaatctaaattatgatgtttggaaaccatcctctggttcaatt
aatcttgcctcccatcaaggaaatcaaatcttaatctcttttggtaaaactttaatttat
tttgaaattaaagatcaaaaaattattaaactcaaagaactagaaatggaatttgaaatt
tcatgtttggatatatcatcatttcaagtaggagagagatcaaagatttgtgttgttggt
ctttggacagatatatcgttgagaattttatctttaccaactttggaacaagtacataaa
gaaaatttgggaggtgaggtcattccaagatcagtcttgatgattgcgtttgaaggtatc
aattatttattatgttcacttggtgatggtcatctttttaactttattgtcgatactata
aataatactcttcatgaaagaaaaaaggtttcacttggtaatcaaccaattattttatca
aaattccaattaaaaggtacagtaaatgtatttgcatcatcggatagaccaactgtaatt
tatagtagtaatagaaaattattatattcagtggttaatctaaaggttgtggttggggta
tgttcatttgactctgaagttttccgtgattgtattgccattgcaacagacaagacactg
tcgattggacacattgacgatattcaaagattgcacattaaaaaaatagatcttggtggc
gagtttgcacgtagaattgcacatgtcgaagcacatcaatgctatgctctcatcaccatc
agaccagatgaatctggtttggaagagagcgaaactgaacaaaatttcattagaatcgtc
aatcaacaaacatttgaaaccattgtaaaatatcccctcaaagaaaatgaatatggttgg
actattttaagtacaaactttaaagaaactttgacatctaattcatcttcaacatcatca
tctacttcaacaacttcaacaacttctacctctggaagaagaagattaccaacaacaaca
acaacaacaacaacgagcaatgatgaagaagaacaaagtgaatatattgttgtgggaacg
acataccattgtcacgatcgaaaagagtgtggaagaatattggttttcaagatgattgat
agtcgattgatattgttggatgagacgactgtacgtggtagcatcttttgcatgattgca
ttcaatggtcagttgttggttgccatcaacaagagtgtccacagatacacctggagtggc
gactcgagctcaggcaagctcacaggcgaagagatatacggtggacacactgcttcgctc
tatttggcgggaagaggtgactttgtgttggtgggtgacatgatgaagtcaatggctctc
ctccaagcgtctggaaaggatgtaaaggagttgtcgcgaagttcacaaccattctggttg
acaggactcacgtttattgacgatgacacctatctcggatcagacaactcgtacaacctc
atcttgatgaaaaagaatacggaaactgccaacgaggttgacagccaactactcgacaac
attggacacatccatactggcgagtttatcaatcgtttccaccatggtactcttgccaca
ctcaccgatgtcgattcacccaaaccaaactctatcattttcgccaccatcagtggttgc
attggcgtcatttcaaccatttcaaagcaagattacgatttcttttcaaaattacaagtt
ggtttaaatagagttattagaggaattggtggtttttctcatgatcgttggagatcattc
caaaatgagcatatttcaaatatagaatcacgtaattttatcgatggagatttggttgaa
caatttttacatcttcgtcatgacaagatgttagaagtaaccaaggatatggatatttca
atcgaagatacatataaaaagattgaaacaacaatgcaaagtattagataa
DBGET
integrated database retrieval system
