Cavenderia fasciculata (cellular slime mold): DFA_05846
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Entry
DFA_05846 CDS
T02668
Symbol
ddx1
Name
(RefSeq) putative RNA helicase
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dfa03041
]
DFA_05846 (ddx1)
03016 Transfer RNA biogenesis [BR:
dfa03016
]
DFA_05846 (ddx1)
Enzymes [BR:
dfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DFA_05846 (ddx1)
Spliceosome [BR:
dfa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
DFA_05846 (ddx1)
Transfer RNA biogenesis [BR:
dfa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DFA_05846 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
SPRY
Helicase_C
Motif
Other DBs
NCBI-GeneID:
14874891
NCBI-ProteinID:
XP_004361563
UniProt:
F4PMW8
LinkDB
All DBs
Position
Unknown
AA seq
771 aa
AA seq
DB search
MSAFEDLGVMPEIICAVEELEWVLPTPIQQEAIPLILGGGDVLAAAETGSGKTGAFALPI
LQITYETINKKAEISVPATTTDNNGEQEQESTTTTKKIEWSTEDRDKDLAINGLLCQSRA
KDWAGGRVTYGVSKAGKYYYEATVKDEGLCRVGWSLKKGTRSIGTDKFSWGYGGTGKKSH
ENKFENFGVGYGLNDVIGCLLDTEAGTITFTKNGEDFGQAYQLDATKLGQVFYPAVLLKN
AEMGFNFGQSSTELLKHLPKGGYIPMCQGELEQDQTTVTSTTTTTTTTSAQVSNNNNNNN
KKGGGKNQQQQQSQQPQEPRKPLSLIIEPVKELADQTYSAILNFSKYLTSPKIEPVLCLG
SDASASKRNIKDLNRNGDIVVGTPGVLDKYIREGVIDVSQIKFFVLDEADQLIRDNLSIL
NYIYNRLPKQGLQVLFFSATLHSNDVVRFAEQITRQPTWVDLKGKDYIPELIQHTYVTAD
PEKFEFWKDALDTTSEKHVPFTTDAMHAMDVKSLDRLKTPEQKSLAIKYLKPQLLVRVIR
AFKMDQALIFARTRVDCDNLQKYLQAVGGGLGGLESEFSSVVLHGEKQAQVRKQNLEKFK
NGDVKYLICTDVASRGIDIQGLPFVINYTLPDTFEDYIHRVGRVGRADRLGVAVSIVGKF
EEKVWYHGCRDRGKGCHNTKLVEQKGCAIWYNEPDLFQAISEKVSPVQLNDQFQLDDMEI
IRNVGKFSNESSNKINEYQAHTEELKNKVIELANLEETIQRDYLNLPLKFK
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcatttgaagatttaggtgttatgccagagattatttgcgctgttgaagagttg
gaatgggtattaccaactccaatacaacaagaagcaatcccattgattctaggtggtgga
gatgttctagctgcagcagaaacaggatcaggtaaaacaggagcatttgcattaccaatc
ttacaaattacatatgaaactataaacaaaaaggctgagatttcagtacctgcaactact
accgacaataatggtgaacaagaacaagaatcaacaacaacaacaaaaaagattgaatgg
tcaacagaagatagagacaaggatttggcaatcaatggtttgttgtgccaatcacgtgcc
aaggattgggcaggtggtcgtgttacatatggtgtatcaaaagctggaaaatattattat
gaagctactgtcaaggatgaagggttgtgtcgtgttggatggtcgttgaaaaagggtact
cgttcgattggtaccgataagtttagttgggggtatggtggaactggaaagaagtcacac
gagaacaagtttgaaaactttggggttgggtatggcctaaacgacgtgattggatgtttg
ttggacactgaagccggtacaatcacattcacaaagaacggagaggattttggacaagcc
tatcaactagacgcaaccaaacttggtcaagtcttttatccagcagttctccttaaaaat
gctgaaatggggttcaactttggtcaaagttcaacagagctattaaagcatcttccaaag
ggtggttatataccaatgtgtcaaggtgaattggaacaagatcaaacaaccgtaacatca
actacaactacaactacaacaacttctgcacaagtatcaaataataataataataataac
aaaaaaggaggaggaaagaatcaacaacaacaacaatcacaacaaccacaggaaccaaga
aaaccattatcattaattattgaaccagttaaagaattggcagatcaaacttattctgcc
attttaaacttttcaaaatatttgactagtccaaagatcgaacctgttctctgtttgggt
agtgatgcttcagcttccaaaagaaatatcaaagatttgaatagaaatggagatattgtg
gttggaacacccggtgtgctggacaagtacattcgtgagggtgtcattgatgtctcgcaa
atcaagtttttcgtgttggatgaagccgaccaattgatccgtgacaacctttcgatccta
aactatatatataaccgtcttcccaaacaaggactccaagttttattcttttcagctaca
cttcactccaacgatgttgtacgttttgccgaacaaatcacacgtcaaccaacatgggta
gatctcaagggtaaagattatattccagagttgattcaacatacctatgtcactgccgat
cccgagaaattcgaattttggaaagacgcacttgatacaacctctgaaaagcatgttcca
tttacaaccgatgcaatgcatgctatggatgtaaagagtttggatcgattgaaaacaccc
gaacaaaaatcacttgccatcaagtacttgaaaccacagcttttagtccgtgtcatccgt
gccttcaaaatggaccaagctctcatttttgcacgtactcgtgtcgattgtgataacctc
caaaagtatttacaggcagttggtggtggtcttggtggtttggaaagcgagttttcaagt
gtcgtactccacggtgaaaagcaagctcaagttcgtaaacaaaacttggagaaatttaaa
aatggagatgtaaagtatttaatttgtaccgatgttgcaagtagaggtattgatattcaa
ggtttaccttttgtaattaattatacattaccagatacatttgaagattatattcataga
gttggtagagttggtagagctgatagactaggtgtggcagtttcaattgttggtaaattt
gaagaaaaagtttggtatcatggatgtagagacagaggaaaaggatgtcataacactaaa
ttggttgagcaaaagggatgtgccatttggtacaatgaaccagacctattccaagccatc
tctgaaaaggtttcacccgtacaattaaacgatcaattccaattggacgacatggagatt
attcgtaatgttggtaaattctcaaacgaaagttcaaacaaaatcaatgaataccaagca
cacactgaagaacttaaaaacaaagtaattgaattggccaatttagaagaaaccattcaa
agagattatttaaatttacctttaaaatttaaataa
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