Cavenderia fasciculata (cellular slime mold): DFA_05999
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Entry
DFA_05999 CDS
T02668
Symbol
rbbD
Name
(RefSeq) WD-40 repeat-containing protein
KO
K10752
histone-binding protein RBBP4
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03082
ATP-dependent chromatin remodeling
dfa03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
DFA_05999 (rbbD)
03083 Polycomb repressive complex
DFA_05999 (rbbD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dfa03036
]
DFA_05999 (rbbD)
Chromosome and associated proteins [BR:
dfa03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
DFA_05999 (rbbD)
Histone modification proteins
HAT complexes
HATB complex
DFA_05999 (rbbD)
HDAC complexes
Sin3A-HDAC complex
DFA_05999 (rbbD)
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
DFA_05999 (rbbD)
PRC2.2
DFA_05999 (rbbD)
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
DFA_05999 (rbbD)
Heterochromatin formation proteins
Other heterochromatin formation proteins
DFA_05999 (rbbD)
Chromatin remodeling factors
NuRD complex
DFA_05999 (rbbD)
NuRF complex
DFA_05999 (rbbD)
NuRF complex (fruit fly)
DFA_05999 (rbbD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
MIOS_WD40
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_DCAF12
Beta-prop_SPT8
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
14876436
NCBI-ProteinID:
XP_004361714
UniProt:
F4PJT9
LinkDB
All DBs
Position
Unknown
AA seq
445 aa
AA seq
DB search
MTPFLIDNNITNTVSRGHIMSTSEEIEEKIIHEEYKIWKKNTPFLYDMIITHALEWPSLT
VNWMPQKTAPPNKQYCVEKVVLGTHTSDAEQNYLMVAKVHLPIDGAQIDSIKYDDQKGEA
GGIGTVSEKIEIVQKINHEGEVNRARVMPQNHTIIATKTVSSEVYVFDTSKHPLEPSPDG
KCAPNLKLMGHTKEGYGISWCPTKEGLLLSCSDDQTICLWNINAAGKSAGTLDADQIFRG
HQSIVEDVGWHYQHDSYFGSVGDDRRLILWDTRQGDKPTKVVEAHTSEVNCLSFNPYCEY
LIATGSTDHTVALWDMRNLGARLHTLISHTDEVFQVQWSPHNETVLASCGSDRRVNVWDL
SRIGEEQNNEDAADGPPELLVCHIDKYFIHGGHTSKISDFSWNPHNPWAIASVAEDNILQ
IWQMAENIYNDKEEDDKVSPSQLGE
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgacaccttttttgatagataataacatcaccaatacagtctctagaggtcatatcatg
tcaacatcagaagagattgaagaaaagatcatacacgaagaatataagatatggaagaag
aatactccttttctctatgacatgatcatcactcatgctttggaatggccttcacttact
gttaattggatgccacaaaagactgcaccaccaaataaacaatattgcgttgaaaaggta
gtattgggaacacatacatcagatgccgaacaaaactatttaatggttgcaaaggttcat
ctcccaattgatggagcacaaatagattctataaaatatgatgatcaaaaaggagaggca
ggaggaataggtacagtatcagaaaagattgaaattgtacaaaagattaatcatgaggga
gaagtaaatagagcacgtgtcatgccacagaatcacactattattgcaaccaagaccgtt
tcatcagaggtatatgtatttgatacgagtaaacatccattagaaccatcacccgatgga
aagtgtgcacccaatctaaagttgatgggtcacaccaaggagggttatggtatatcgtgg
tgtccaaccaaggaaggactccttctttcatgttcagatgaccaaactatatgtctgtgg
aacatcaacgcagcaggtaaatctgctggtacattggatgccgaccaaatctttcgtgga
catcaatcgattgtcgaggatgtcggatggcactatcaacacgattcatattttggttcg
gttggtgatgatcgtcgtctcatactttgggacactagacagggtgacaagccaaccaag
gttgtcgaagcacacacctcagaggtcaattgtttatcattcaatccatactgcgaatac
ctcattgccactggctccaccgatcacactgttgctctctgggacatgagaaatctcggt
gctcgtctccacaccctcatctcgcacactgacgaagtcttccaagtccaatggtctcca
cacaacgaaacagtacttgcctcgtgtggctctgacagacgtgtcaatgtttgggatcta
tccagaattggtgaagaacaaaataatgaagatgctgctgatggtccaccagaattattg
gtatgtcatattgataaatattttattcatggaggtcatacaagtaaaatatcagatttc
tcatggaatccacataatccatgggctattgcatctgtagctgaagacaatattttacaa
atatggcaaatggcagagaatatttacaacgacaaagaggaagacgataaggtttctcct
tctcaactcggagaataa
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integrated database retrieval system
