Cavenderia fasciculata (cellular slime mold): DFA_06236
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Entry
DFA_06236 CDS
T02668
Name
(RefSeq) putative CCR4-NOT complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DFA_06236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfa03019
]
DFA_06236
Messenger RNA biogenesis [BR:
dfa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
DFA_06236
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
DFA_06236
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
ARM_Cnot1
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
14876146
NCBI-ProteinID:
XP_004361948
UniProt:
F4PKH3
LinkDB
All DBs
Position
Unknown
AA seq
2350 aa
AA seq
DB search
MDVQQQLQQQQQQQQQQQQQKTSSSSSDSNNIGEGSSFKSADKLYYNQWSIHQQQQDVEV
MTNLSFIISSQIDNLLSMLTKKSYKSICSDIAQIINQFGNQAEIFLFRKLIDSIDFKDPK
DAFKIQLFRDEFSRLMKQPHFTTVLCKAFEGVDNLNQEFLTTFSQLLKLTPPQEILLGLA
ISHSLNPQMKEQGEKYLLSIPQTNIKSLPENVLHHLLFKYKVQEAEGGGNGEVLKYIQSL
LPPTPSLALSPFMSPSDDVSIPNSKRSLVDNASQFVHSLIQKVASSNSNSAVQLIQSVGF
SACASSAALKELLAQFPRLSESDVAQAIGMMAETTSHPPPTSDSNAQVPLILSFGQQPQQ
QQQQSSPPMVQPLTPKEGDEAVLLESSKAWNYPVFVDVIKELYPSLDWSTVIRELDHPGF
ILHDQRGLSLILAIFKRASPNERFPVHHILDCAWNNSIGQISFIKVALQSDFPFHFSQKK
RIEYSALGKVSQTVAHWNSLSLIEILLTLSEIDQEHYYRTRALFEYPLKHCPELLLMGLA
SLINQMGNLLLKEILSILFQSLLFNHNYQAYISQLWKENPNIVVFGMTDIYLKDNSTLSR
LLDVAQELKILLQLLSTKSYYPFIIELALLASQREFLFLEKWLQDRLKEDSNDYEFARAS
SLFLHDRVTRKLKGTEPLGHITSVVILAKLYETLIKTVDIYPSDIGVILKDINPKFEDIL
NQQAISQTGIPLQQQQSSPQHQQQLGGGGGPNNGTERRFPEEIEEETNAYFIKLYHEEIS
VEQIIAILKEYKSSQNQREQEIYQCLLFNLFDEYKFLSGYPDKELRITALLFGSLIKYQL
ISSQALRIALKYVLEALKHPVNSNLFIFGVNSLVSFANRLVEWPQYWTQVCSIDHFKNYM
NGDLVKQISSIIEVTKKSPADASLRAMNSPPTSIQDENLDNASDKSLFMSDQQKLQHQEA
SNHHQQHHGGQNVGQQQQQQQQQQQPSGQTSYSSAGQKPSNTVGGGNDGGDDQNNPYNSQ
QQQKDNNGSKKKESKKDNNIEEIVSSTGLPLGTIKQCENHELIEPEEVIRDKMFFIINNV
SMYNLDAKVKEMKDILKPEFFPFLAQYLVHKRVSIEPNFHNVYMQFLDRLNILEFHAQIL
FFTQHYIHTLLSSEKIKTDHSERTLLKNLGGWIGMLTLGKNKPLLQKFISPKDLLIYAAD
TGLMIAVVPFVTKVLDSCQTSRVFKPPNPWVMAIVRLLGEIYQLKESKNNIKFEIELLLA
NLKLDLADIKPSTLIKDRREEMQRMLEMEQRQHSMMPHQQLPSALELLQNLPGYIQYSSS
LGPLLASPVFKKAVPAAIERGIKEIIGPVVERSVAIAVITSKELVSKDFATEADERKMKK
ASHLMVQNLAGSLALVTCKDPLRVGISTHLRSFLLSSTGAQADQQLPPQLEMALNTVIQD
NLDFACSIVERAATEKAVIDIDTVLASSYAERLKHKETAPHQPYFDFGYLTTNIYNNLPE
PLRPKPGGIQPDQFRVYEDFLNLPHHANIAAMVQGSSDIDPQQQQQQQQAAQLQQLQQQQ
LQQQAAQLQQQQLQQQAAQLQQQQQQQQQQQQTISNGELLEKFGYMLNEVDKLGMLRAQQ
NAPIEFDLLYSIVQQMGSFVVTSANQNELLQQFAQKLFSRLGDPDKKLLYEVYFELLEVL
KEWDLKIVNVLNSLLHFSSVDKKLNRILIYGLIIHQLINVNDYDQQLAQLMLEGRTASQA
FEFAISLIRFTVIENAYAVPSEFAITIELLNKMAQRGSSDMLLKTVEDAKNQPDEKKRRI
SRIKQEEMNRDPPGLKDAVCSLLQDWLVFSTANSDHKIQIQYLQQVLQLNMMKNEIYFQK
FFRMGLEWAVEKYMASYIESLQQAQPTQPQQQQQAAAAQSANYMEIDAYCKFVVMMVKHG
DNTHLTVLTKVLGFLIKLLTKDYETYGFRFNQRPYLRIFENLMTDLNAPDPILEQSSISI
LYCFVNALATLQPQKYPAFCFAWLDLISHRSFMPKLLAKPMQQQQTPQQVQQHQQQKAWF
HTLLVQHFKFLDPFLRGVDVSEPLRLLYKGTLKILLVLLHDFPEFLCEYHFSFCDVIPAT
CIQLRNLVLSAFPRSMRLPDPFTPNLKVDLLPDINHPPKISSNFTLALKGLKNEIDSYLK
IRGPPSFLAELKNKYLMLEPGEDIIAGTRYNVPLINSLVLYVGTLAIPQVQRKNGGGAAS
PTHNAPMDIFHRLCIDLDPEGRYLFFNAITNQLRYPNSHTHYFSCVLLYLFAEANQEVIK
EQITRVLLERLISNKPHPWGLLITFIELIKNPRYNFWSHSFTRIAPEIEQLFESVAKSCM
NRGDSSNPNQ
NT seq
7053 nt
NT seq
+upstream
nt +downstream
nt
atggatgttcaacagcaactacaacagcagcaacagcaacaacagcaacaacaacaacaa
aagacatcctcctcatcatctgatagtaacaatatcggagaaggatcatcattcaagtca
gcagacaaactttactataatcaatggtctattcaccaacaacaacaagatgtcgaagtc
atgaccaacctatcgtttattattagttctcaaattgataacttgttatcaatgttgaca
aagaaatcatataaatcaatatgttctgatattgctcagatcataaatcaatttggaaat
caagcagagattttcttgtttagaaagttgattgatagtattgactttaaggacccaaag
gacgcattcaaaatccaattgtttagagacgagttttcaagattgatgaaacagccacac
tttacgaccgtcctctgcaaagcctttgaaggtgtcgataatttgaatcaagagtttctc
acaaccttttcacaactcttaaaactcactcctccacaagaaatattattaggtttggcc
atctctcattctcttaatccacaaatgaaagaacaaggagaaaaatatttattatcaatt
ccacaaacaaatattaaatcattgccagagaatgtacttcatcatctattgttcaagtac
aaggtacaagaagctgaaggtggaggtaatggagaggttctcaaatatatccagtcgctc
ctccctcccactccatcgctcgcgttgtctccgttcatgtcgccatcagacgacgtgtcg
attcccaactcgaagcgttcactcgtcgacaatgccagccaatttgtacattcactcatc
caaaaggtggcgtcgtccaacagcaacagtgcggtacagctgatccagagcgtcggcttc
tcggcctgcgcatcgtctgctgcactcaaggagctgctcgcccaattcccccgtctctca
gagtcggacgttgcacaggcgattggtatgatggccgagaccacctctcatcctccacca
acctctgattcgaatgctcaagttccactcatcctctcgtttggtcaacagccccaacaa
caacaacaacagtcatctccaccaatggttcaaccactaactccaaaagaaggtgatgaa
gcagtgttgttggagagcagcaaggcttggaactacccagtctttgttgacgttatcaaa
gagttgtatccatcactcgactggtcgaccgtcatccgagaactcgatcatccaggcttc
attcttcatgaccaaagaggtctgtccctcatcttggccattttcaaacgcgcatctccc
aatgagagattcccggtacaccatatcctcgactgtgcctggaacaactcgattggccag
atctcctttatcaaggtagcccttcaatccgactttccattccacttttcccaaaagaaa
cgtatcgaatactctgcacttggcaaagtttcccaaactgtcgcccactggaattcactt
tctcttattgagattttgttaactctctctgaaatcgatcaagaacactattatcgtacc
agagctctattcgaataccctcttaaacattgtccagagcttttattaatgggtcttgct
agtttaattaatcaaatgggaaatttattattaaaagaaattttatcaattttattccaa
tcattattgtttaaccataattatcaagcttatatttctcaattatggaaagaaaaccca
aatatcgttgtatttggtatgaccgatatttatcttaaagataattcaaccttgtcaaga
ttattagatgttgcacaagaattaaaaatattattacaattattaagtacaaaaagttat
tatccatttattattgaattggcattgttggcaagtcaaagagaatttttatttttagag
aaatggttacaagatcgtctaaaggaggattcaaacgattatgaatttgctcgagcatct
tctttattccttcatgatcgtgtcactagaaaactcaaaggaacagaaccacttggccat
attacctcggttgtcattctcgccaagctctatgaaaccttgatcaagactgtcgatatc
tatccatcagacattggagtcatcctcaaagacattaatccaaagtttgaagatatcctc
aatcaacaggcaatctctcaaactggtataccacttcaacaacaacaatcttctccacaa
catcaacaacaattaggtggtggtggtggtccaaacaatggcaccgaaagaagattccca
gaggaaattgaagaagagaccaatgcttactttattaaactctatcatgaagaaatctct
gttgaacaaatcattgcaattcttaaagaatataaatcttctcaaaatcaaagggaacaa
gaaatttatcaatgtttattatttaatttgtttgatgaatataaattcctttcaggttat
ccagacaaggaattgagaattacagcattgttgtttggatcattgataaagtatcagttg
atttcaagtcaggcattgcgtattgcattgaaatatgtgttggaggcgttgaaacatccg
gtaaactctaatcttttcatatttggtgtcaattcattggtttcctttgccaaccgattg
gtcgagtggccacagtattggactcaggtgtgttcaatcgaccactttaaaaactatatg
aatggtgacttggtcaagcagatttcatccatcattgaagtcactaaaaagtcaccagcc
gatgctagtctccgtgcaatgaactctccaccaacatcgatccaagatgaaaacctcgac
aatgcatccgacaagtcattgtttatgagtgatcaacaaaagttgcaacatcaagaagca
agtaatcatcatcaacaacatcatggtggacaaaatgttggtcaacagcagcagcaacaa
caacaacaacagcaaccaagtggacaaacttcctattcttcagcaggacaaaagccatca
aatactgttggtggtggaaatgatggaggtgatgatcaaaataatccgtacaatagtcaa
caacaacaaaaggataataatggttcaaagaaaaaagagagtaaaaaggacaacaacatt
gaagagattgtgtctagtacaggtttaccacttggtacaatcaagcaatgtgagaatcac
gagcttatcgaaccagaggaagtgattcgtgacaagatgtttttcatcattaataatgtc
agtatgtacaacctcgatgccaaggtcaaggagatgaaggatattctcaagcctgaattc
ttcccctttttggcacaatacctcgttcacaagcgtgtgtcgatcgaaccaaacttccac
aatgtgtatatgcagttcctcgatcgattgaacattctagagttccacgctcagattctc
ttctttactcaacactatatccatacgttactcagttcggaaaagatcaagaccgatcat
tctgagcgtacactgttaaagaatctcggtggttggattggtatgttgacacttggaaag
aacaagccattgttgcaaaagtttatctcgcccaaggatctcctcatttatgccgccgac
actggactgatgattgcagtcgttccatttgtcaccaaggtactcgacagctgtcagaca
tcacgtgtgtttaaaccacctaatccatgggtgatggccattgtccgtttgcttggtgag
atttaccagctcaaggaaagcaagaacaatatcaagtttgagattgagttgttgcttgcc
aacctcaagcttgacttggccgatatcaagccgtcgacactcatcaaggatcgtcgcgag
gagatgcagcgtatgctcgagatggagcagcgccaacactcgatgatgccacatcaacag
ctgccatcggcactcgagttgctccaaaatctgcctgggtacattcagtacagttcgtcg
ctcggtccattgctcgcatcacccgtctttaaaaaggcagtgcccgcagcgattgagcgt
ggtatcaaggagattatcggtcctgttgtcgaacgttctgtggcgattgccgtcatcacc
tccaaggagctggtcagcaaggactttgcgaccgaagctgatgagcgcaagatgaaaaag
gcgtcgcatctcatggtacagaatctcgctggcagtttggcgttggtgacgtgcaaggat
ccgttgcgcgttggtatctctactcatttgcgtagtttcttgttgagctcgaccggtgct
caggccgaccaacagctgccaccccagctcgagatggcactcaacactgtcatccaagac
aatctcgactttgcttgttcgattgtcgagcgtgccgccacggaaaaggcagtcattgat
attgacacggtgctagcgtctagctatgccgagcgtctcaagcacaaggagaccgctcca
caccaaccctactttgactttggatacctcactaccaacatttacaacaatctgccagaa
ccactccgtcccaaacccggaggtatccagccagatcagttccgcgtgtacgaggatttc
ctcaaccttccccaccacgccaatattgctgccatggtacagggatcgtccgacattgat
ccacagcaacagcaacaacaacaacaagctgctcaactccaacaattgcagcaacaacag
cttcaacaacaagctgctcagttacaacaacagcaactccaacaacaagctgctcaactc
cagcaacaacaacagcaacagcaacaacaacaacaaaccatctccaatggcgagttgctc
gaaaagtttggctacatgctcaacgaagtcgacaagttgggtatgttgcgtgctcaacaa
aatgcaccaatcgagtttgacctactctacagtatcgttcaacagatgggatcgtttgta
gtgacatctgccaaccaaaacgaattgttgcaacagtttgcacaaaagttgtttagtcgt
ttgggtgaccctgacaagaagctcctctatgaagtctactttgaattgctcgaagtactc
aaagagtgggatctcaagattgtcaatgttctcaactcgttgttacacttttcatcggtt
gacaagaaattgaaccgtatcctcatctatggtctcatcatccatcagctcatcaatgtc
aatgactatgatcaacaattggcacagctcatgttggagggtagaaccgcatctcaagcc
tttgagtttgccatttctctcattcgattcactgtgattgagaatgcctatgctgtacca
agcgagtttgccatcaccatcgagttgctcaacaaaatggcacaacgtggtagttcagac
atgcttctcaagacggtcgaggacgccaagaaccaaccagacgaaaagaaacgtcgtatc
tctcgtatcaaacaggaagagatgaatcgcgatccaccaggtctcaaagacgccgtctgt
tcattgctccaagactggcttgtcttttctactgccaatagtgaccacaagatccagatt
cagtatctccaacaggtactccaactcaacatgatgaagaatgaaatatactttcaaaag
ttcttccgtatgggtttggaatgggctgttgaaaagtatatggctagttatattgaatca
ttacaacaagctcaaccaactcaaccacaacaacagcaacaggctgctgcagcacaatct
gccaattatatggagattgacgcgtattgcaagtttgtagtgatgatggtcaaacatggt
gacaacacacatttgacagttctcacaaaggtacttgggttccttatcaagttactcacc
aaggattatgagacttatggatttagatttaatcaacgtccatacctacgtatctttgag
aatcttatgactgatctcaatgcacccgaccctattctcgaacagtctagtatctcgatt
ctctactgctttgtcaatgcacttgccactcttcaaccacagaaataccctgcattctgt
tttgcctggctcgacctcatctcacatcgttcgtttatgcccaagctactcgctaaaccc
atgcaacaacaacagacaccacaacaagtccaacaacatcaacagcaaaaggcgtggttc
catactctgctcgtacaacactttaagttcctcgacccgttcctcagaggtgttgacgtg
tctgaaccactccgtctgctctacaagggtacactcaagatcctcctcgtactcttgcac
gacttcccagagtttttgtgtgaataccatttctcgttttgtgatgtgatccccgccacc
tgtatccaactacgtaacttggtattgtctgcattcccacgtagtatgcgtctgccagat
ccctttacacccaatctaaaggttgacctcttgccagacattaaccatccacccaagata
tctagcaactttacactcgccctaaagggactcaaaaacgagattgacagttacctcaag
atccgtggtccaccatcgtttttggctgagctcaagaacaagtatcttatgctcgaacct
ggagaagacattatcgctggtactcgttacaatgtcccactcatcaactcgctcgtgctc
tatgtcggtaccctcgccataccccaagtacaacgcaagaatggtggaggagcagcctca
ccaactcacaatgctccaatggatatcttccatcgtctctgtatcgacctcgatcccgaa
ggaagatacctcttctttaacgcaatcaccaatcaattacgttatccaaatagtcatact
cattactttagttgtgtactcttgtatcttttcgctgaagctaatcaagaagttattaaa
gaacaaattactagagtattacttgaaagattaatttcaaacaaaccacatccatgggga
ttattaattacctttattgaattgatcaagaacccaagatacaatttctggagtcattca
tttactcgtattgcccctgaaattgaacagctatttgaatctgttgcaaaaagttgtatg
aatagaggtgattcttcaaatccaaatcaataa
DBGET
integrated database retrieval system
