Cavenderia fasciculata (cellular slime mold): DFA_06449
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Entry
DFA_06449 CDS
T02668
Name
(RefSeq) 3'-5' exoribonuclease
KO
K07573
exosome complex component CSL4
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DFA_06449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfa03019
]
DFA_06449
Messenger RNA biogenesis [BR:
dfa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
DFA_06449
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
DFA_06449
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
S1_RRP4
Motif
Other DBs
NCBI-GeneID:
14876252
NCBI-ProteinID:
XP_004362150
UniProt:
F4PJ13
LinkDB
All DBs
Position
Unknown
AA seq
246 aa
AA seq
DB search
MNTIVTPGQKLCKDTEYISSEGTYVHKGSIYSSVLGFSHTIKRNINTDNNNETTTTSSSG
SSSSIPSEYNNSTSEDKRDYIVVLKEKEPGIVPEIGNVVTVQVLRINPRLASCAILCVGT
KALKETFNGVIRVQDVRATEIDKVEIYKSFRPGDIVSAEVISLGDSRSYYLSTAKNELGV
VFAQSVVGATMIPVSWNQMQCPKTKTKEYRKVAKMDIAGTDQDDDNDTENGHENEKEDNN
NESDQE
NT seq
741 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaatagtaacaccaggtcaaaaactatgtaaagatacagaatacatatcttcg
gagggtacctatgtacacaaagggtcgatatactcctcagtattgggtttctctcacact
atcaaaagaaatataaatacagataataataatgaaactactactacaagtagtagtggt
agtagtagtagtataccatcagaatataataatagtacttcagaagacaaaagagattat
atagtagtattaaaagaaaaagaaccaggaatagtaccagagattggtaatgtagtaaca
gtacaagtattgagaatcaatcctcgtttggcaagttgtgctattctttgtgttggaact
aaagcgctaaaggagacttttaatggtgtcattcgtgttcaagatgttagagctacagaa
attgataaagtagagatttataaatcatttagacctggtgatattgtatctgctgaagtt
atttcattgggtgattcaagatcatattatttatcaactgcaaagaatgaattgggagtt
gtatttgcacaaagtgttgttggagcaactatgattccagttagttggaatcaaatgcaa
tgtccaaagactaaaacaaaggaatatagaaaggtggctaaaatggatatcgctggcaca
gaccaagacgacgacaacgatactgaaaatggtcatgaaaatgaaaaggaagacaataac
aatgaaagtgatcaagagtaa
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