Cavenderia fasciculata (cellular slime mold): DFA_06624
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Entry
DFA_06624 CDS
T02668
Symbol
usp39
Name
(RefSeq) SAP DNA-binding domain-containing protein
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DFA_06624 (usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dfa03041
]
DFA_06624 (usp39)
Spliceosome [BR:
dfa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
DFA_06624 (usp39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
zf-UBP
SR-25
PyrI
IMUP
DUF3446
Motif
Other DBs
NCBI-GeneID:
14870004
NCBI-ProteinID:
XP_004356850
UniProt:
F4Q1T8
LinkDB
All DBs
Position
Unknown
AA seq
524 aa
AA seq
DB search
MSNNNNNNNNKDNRNAINTIVEEKDNKKRVASDQYVVDDDEDIDIASMLAGNKSRKRYHN
PTNNDNNNQTPLTTPSSSSSYSSKSTIARRDCPYLDTVNRGVLDFDFDKVCSISMVKHNV
YACLVCGKNFQGRGEGSHAHYHCLQSNHHVFANLHTQKFYCLPEDYEIIDPSLDDIRYLI
NPTFTKEQISKMDSNIKQSRSLDGGLYYPDPLQQIENRNNQNNNQNNVHISFSKSSALVS
TFSELLRRMWNPRNFKSQVSPHELIQAVIKASKKRFSIGVESDPLDLLQWLLNSLNNDII
EQKNITGNSSSSSSSSSSSSSSSSSSTIITNTFQGMVEVTTKSLLKAPTQQEEQDNITNN
QEFKTTKQIIPFFTLALDLPSRSIFKEDRDKSFIPQIPLYELLNKYDGSTEKIFPNGDIK
RFRLLKLPSYLVFSIKRFSQNNFFTEKESTIVNFPLKNLEMKDFISRDNQSINDDVEKYK
YNLMAMIKHEGDINQVQDLTVKETMAPLIAVSEAYILVYEQQQQ
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacaacaacaacaacaacaacaacaaagacaacagaaatgccatcaatacaata
gtagaggaaaaggacaacaaaaagagggttgcatctgatcaatatgttgttgatgacgat
gaggatattgatattgcatcaatgttggccggaaacaagagtcgaaagagatatcacaat
ccaaccaataatgataacaacaatcaaactccacttacaacaccttcctcttcttcttct
tattcttcaaaatcaactatagctagaagagattgtccctacctggatactgtcaatagg
ggagtattagactttgattttgataaagtctgctcaatctctatggtgaaacacaatgta
tatgcctgtttggtttgtggtaaaaactttcaaggaagaggagaaggatcacatgcccac
tatcattgtctacagagtaatcatcatgtctttgctaatcttcacactcaaaagttttat
tgtcttcccgaagactatgaaatcattgatccatctcttgatgatataagatatttaatc
aatccaacatttacaaaagaacaaatatcaaaaatggacagcaatataaaacagtctaga
tcacttgatggtggactatactaccctgatcctcttcaacaaattgaaaatagaaataat
caaaataataatcaaaataatgttcacatctcatttagtaaatcatcagcattggtatca
acattttctgaactactcagaagaatgtggaatcctcgtaactttaaatctcaagttagt
ccacacgaacttattcaggctgtgattaaagcaagcaaaaaaagatttagtattggtgtt
gaaagtgatccacttgatttgcttcagtggttattaaattctttaaataatgatatcatt
gaacaaaaaaacatcactggtaactcttcatcctcctcctcctcctcctcctcctcctcc
tcctcttcttcttcttctacaatcataaccaatacatttcaaggaatggtagaagttaca
accaaaagtcttcttaaagcaccaacacaacaagaagaacaagacaatataaccaacaac
caagagttcaaaaccaccaaacagataataccattctttacactagccctagaccttcca
tctcgatctattttcaaagaagatcgtgacaagagttttattccccaaatcccactctat
gaattgctaaacaaatacgatggatcaacagaaaagattttcccaaatggagacattaaa
cgatttagacttttaaaactgcctagctatctagtcttttccatcaaacgattctcacaa
aacaacttttttactgaaaaagaatcaaccattgttaactttcctctaaagaatttggaa
atgaaagattttatatcaagagacaaccaaagtatcaatgatgatgtcgaaaagtacaaa
tacaatttgatggcaatgatcaaacatgaaggtgatattaaccaagtgcaagatttgaca
gtaaaagaaacaatggctccccttattgctgtatctgaagcttacatccttgtctatgaa
caacaacaacaataa
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