Cavenderia fasciculata (cellular slime mold): DFA_07300
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Entry
DFA_07300 CDS
T02668
Symbol
ddx55
Name
(RefSeq) putative RNA helicase
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dfa03009
]
DFA_07300 (ddx55)
Enzymes [BR:
dfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DFA_07300 (ddx55)
Ribosome biogenesis [BR:
dfa03009
]
Eukaryotic type
Pre-60S particles
Helicases
DFA_07300 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
GATA
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
14872387
NCBI-ProteinID:
XP_004367163
UniProt:
F4PW16
LinkDB
All DBs
Position
Unknown
AA seq
1288 aa
AA seq
DB search
MIIVGSWLVPTRVQPTNQPTNSTTINNNNNNNDENSSKNNSIKDEVPVRDTSCYNKNDDE
EEEEEDTRMNIEIRNISTTKDQREGESRCLGVLSQLHVETFRINQSIETIRKDITHSQKR
YTLADYRMLVENLTPIFKGMLSVLEEYGSELNGQPVNEPTQTTGTTTTNQKKQRSSKQHI
ESSSRKKPTNSPILSPVNNPNNINNNSNQNNNNNQFYGQPTLSSSTLSTLTSFKLPPLHT
QLHHSSLQPLPFLHSPPKLPPSPRDHHHHSPFDSPRQAILGGSTTYGLANSPTTTNPFEL
DDTPAKPPDIVKEVPPEPGHLTDGTSTTNSTTATTNMAPDNSTSMSTSMRAKRGRGRPPQ
SKPNHCARCKRTDTPEWRKGENGIDLCNACGLQFMKRNRKDKETVDLLLSSFQHVQYQQQ
QQQQQPVDGSLEFQSEQSVDQQTLQQHQHQQYQTSHPQLPQLQTYQHYTQSSPRYHTPPE
ESIYINNNNNNSNNNNTNRTTTPPPPPVISQLPYIDFNYLRPNNSPPPYTTTIHHPFNTS
TNNNNNSNNNKKLNRERERMNLTGGGAKWSTVRPTISDHVLGIIKKLGFDTMTPVQSATI
PLFLSNKDVLVEACTGSGKTLSFIIPIIEILLKKQPEELTKHQVLAVIVTPTRELAVQIF
GILEQFVHGLDHIKRLLLIGGTEVYEDVQKFNKDGGNVIVATPGRLEDVLSRVERNMKLK
EFEMLILDEADRLLDMGFDTALNAVLDRLPKQRRTGLFSATQTTELKELARMGMRNPVKV
SVAVQQKGTNQVSAIPSTLENRYTMLEPSEKFGVLADFMDKNMNNSKIIVYFLTCADVDY
FSSLMTKMSQFKDRVKDIFSLHGKVPHERRKFVFDKFSAKDSGVIFVTDLVSRGIDFPSV
DWVIQYDAPQDPKTFIHRIGRTARMGRTGNAMLYLSKAEDDYLEFMRLRKVSMVETPKPD
TLALEHYTKEMRRVILSNRQIMERSIVAFVSYARAYKEHTCSYIFVTRKLDFGSLAHGYG
LLRMPKMPELRFFNPDTWASGVSREDIEKVPYVDKKREAKRLIQLKESKKKQEKREKKKE
AKVKKILSISGLKMEDLTGKKQVKEEENEDDSDESEDEVEALMRADQDQEVKQEEDEDEE
EEEDSEDDSSEEEEETTKTPVRKSAPKIVKDEEQLKQEDRETVNRDYLEMKKNNKRKNRG
FHGDLDDFDSIEKEIKLEIKKKKQEEKENKSKSTTTTATTTTTGGITKPLSKNAEKKKNK
NKKPEFAPKKTYHKKVQNSSRQKKSSRK
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atgattatagtaggtagttggttggttccaactagagtacaaccaaccaaccaaccaacc
aactctactactattaataataataataataataatgacgaaaatagtagtaaaaataat
agtataaaagatgaagttccggttcgagataccagttgttataacaaaaatgatgatgaa
gaagaagaagaagaggatacaagaatgaacattgagattaggaatatctcaacgacaaag
gatcaacgtgagggagagtcacgttgtttaggggttttatcacaacttcatgtcgagact
tttaggatcaaccaatctattgaaacaatacgaaaggacattacccactcgcaaaaaagg
tatacccttgccgattatagaatgctagttgaaaatctgacacccattttcaaaggcatg
ctatctgtacttgaagaatatggcagtgaattgaatggccaaccagtcaatgagcccaca
caaactactggtacaacaaccaccaatcaaaaaaagcaaaggagttccaaacaacatatt
gaatcatcgtctcgaaaaaaaccaacaaactctcctattttatcacctgtaaataatcca
aataatattaataataatagtaatcaaaataataataataaccagttttatggacaacca
acattatcctcttccactctgtcgactctgacatcttttaaactaccaccattacataca
caattacatcattcttcattacaaccacttccatttttacattctccaccaaagttacct
cctagtccgagggatcatcatcatcattcgccatttgactcacccagacaagctattctt
ggaggatctactacatatggattggccaacagtccaacaacaacaaatccatttgaattg
gatgataccccagccaaacctccagatatcgtaaaggaagtccctccagagccgggtcat
ttaacagatggcaccagtacgaccaactccaccaccgccaccaccaacatggcaccagat
aacagtacgagtatgagtactagtatgagagccaagagaggaagaggtcgtcctcctcaa
tcgaaaccaaaccattgtgcacgttgtaaaagaacagatacaccggaatggagaaaagga
gagaatggaatagatctttgcaatgcttgtggtcttcaatttatgaagaggaatagaaaa
gataaagaaactgttgatttactattaagtagttttcaacatgttcaatatcaacaacaa
caacaacaacaacaaccagttgatggttcattagagtttcagagtgaacaatctgtcgat
caacaaactctacaacaacatcaacatcaacaatatcaaacatcacatccacaattacca
caattacaaacgtaccaacattatacacagtcatcacctagatatcatacaccacctgaa
gaatcaatatatataaataacaataacaataatagtaataataataataccaaccgaact
acgacaccacctccaccacctgtgatatcacaactaccctatatagattttaattatctc
cgtcccaacaactcaccaccaccatatactacaactattcatcatccttttaatactagt
actaataataataataatagcaataataacaaaaagttaaatagagaaagagagagaatg
aatttaacaggaggaggagcaaagtggagtacagttagaccaactatatcagatcatgta
cttggtatcattaaaaagttggggtttgatacaatgactcccgttcaatcggccaccatc
ccattattcctttcaaacaaagatgtattggtagaagcatgtacaggttcaggtaaaaca
ttgtcattcatcatcccaatcattgaaatcctattaaagaaacaaccagaagaattgaca
aaacatcaagtattggctgttattgttactccaactagagaattagcagtacaaatattt
ggtattttagaacaatttgttcatggattagatcatattaaacgattgttattaattggt
ggtactgaagtatacgaagatgttcagaaattcaacaaagatggtggcaatgttatagtt
gcaacacctggtagattggaagatgtattgagtcgtgttgaacgtaacatgaaactaaag
gaatttgaaatgttaatccttgatgaagccgacagacttttagatatggggtttgatact
gctttgaatgctgttttagatagattaccaaaacaaagaagaactggattatttagtgca
acacaaacaacagaattaaaagaattggcaagaatggggatgcgtaatcctgtaaaagtt
agtgtagcagtacaacaaaagggaacgaatcaagtatcggctatcccatcgacacttgag
aaccgatacaccatgttggaaccaagtgaaaagtttggagtgttggccgatttcatggac
aagaatatgaacaatagtaagatcattgtctactttttaacgtgtgccgatgttgattac
ttttcatctttgatgaccaagatgtcacaattcaaggaccgtgttaaagacattttctcg
ttgcatggaaaggtaccccatgaacgtcgtaaatttgtatttgacaagttctcggccaag
gatagtggtgtcatctttgtcactgatctcgtcagtagaggtattgatttcccatcggtt
gattgggtcatccaatacgacgctccacaagatcccaagacatttattcatcgtattggt
cgtactgccagaatgggtcgtaccggtaacgccatgctctatctctccaaggccgaagac
gattacctcgagtttatgcgtctcagaaaggtgtcgatggtcgagacacccaagccagac
accctcgcattggaacactacaccaaagagatgcgtcgtgttattctctctaatcgtcag
atcatggagcgtagtatcgttgcctttgtatcgtatgctcgtgcctacaaagaacacact
tgcagctacatctttgtcactagaaaattggattttggttcactcgctcatggatacggt
ctcttgagaatgccaaagatgccagaactcagattctttaaccccgacacatgggcaagt
ggtgtatccagagaggatattgaaaaagttccatatgttgataaaaagagagaagctaaa
agattaatacaattaaaagaatcaaagaaaaaacaagaaaagagagaaaagaaaaaagaa
gcaaaggtaaagaaaatattaagtattagtggtttgaaaatggaggatcttacaggaaaa
aagcaagttaaagaggaggagaatgaagatgacagcgatgaatcagaagatgaagttgag
gctttaatgagagctgatcaagatcaagaagttaaacaagaagaagacgaagacgaagaa
gaggaagaagatagtgaggatgattcatcagaggaagaggaggaaacgacaaaaactcca
gttagaaaatcagcaccaaaaattgtaaaggatgaagaacaacttaaacaagaagataga
gaaacagtaaatagagattatttggaaatgaagaaaaataacaagagaaagaatagaggt
ttccatggtgatttggatgattttgattcaatagaaaaggaaattaaattggaaattaaa
aagaagaaacaagaagaaaaggaaaataagagtaaatcaactactactacagcgacgact
actactacaggtggtatcactaaaccactttcaaaaaatgcagaaaagaaaaaaaacaaa
aacaagaaaccagaatttgctccaaagaaaacttatcataaaaaggttcaaaactcttca
agacaaaagaaaagctctagaaaataa
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