KEGG   Cavenderia fasciculata (cellular slime mold): DFA_07891
Entry
DFA_07891         CDS       T02668                                 
Symbol
lsm6
Name
(RefSeq) LSM domain-containing protein
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
dfa  Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03018  RNA degradation
dfa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dfa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    DFA_07891 (lsm6)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DFA_07891 (lsm6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dfa03019]
    DFA_07891 (lsm6)
   03041 Spliceosome [BR:dfa03041]
    DFA_07891 (lsm6)
Messenger RNA biogenesis [BR:dfa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     DFA_07891 (lsm6)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     DFA_07891 (lsm6)
Spliceosome [BR:dfa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    DFA_07891 (lsm6)
SSDB
Motif
Pfam: LSM SM-ATX RimP_C
Other DBs
NCBI-GeneID: 14869169
NCBI-ProteinID: XP_004355384
UniProt: F4Q3Z6
LinkDB
Position
Unknown
AA seq 95 aa
MSAVAPSTTSASGGAATSNNNNAQFNFFKMCIGRPVVVKLNNGVEYRGILEVVDGNMNIV
MEQTEEYLNGQLKTKYGDCFLRGNNVLYISAQSKK
NT seq 288 nt   +upstreamnt  +downstreamnt
atgtcagcagtagcaccatcaacaacttcagcatcaggaggagcagcaacatctaataat
aacaatgcgcaattcaactttttcaaaatgtgtataggtagaccagtagtagtcaaactt
aacaatggtgtagaatatagaggtatcttggaagtagtagacggcaatatgaatatagta
atggaacaaacagaagagtatttaaatggacaattgaaaacaaaatatggtgattgtttc
ttgagaggaaataatgttttatatatatcagcacaatctaaaaaataa

DBGET integrated database retrieval system