Cavenderia fasciculata (cellular slime mold): DFA_08117
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Entry
DFA_08117 CDS
T02668
Symbol
prpf8
Name
(RefSeq) pre-mRNA processing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DFA_08117 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dfa03041
]
DFA_08117 (prpf8)
Spliceosome [BR:
dfa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
DFA_08117 (prpf8)
Complex C
U5 SnRNP specific factors
DFA_08117 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
RRM_4
PROCT
JAB
Motif
Other DBs
NCBI-GeneID:
14869354
NCBI-ProteinID:
XP_004355619
UniProt:
F4Q576
LinkDB
All DBs
Position
Unknown
AA seq
2335 aa
AA seq
DB search
MSSTTTSNNSSSENNNQLDDSKLQEKAKKWLQINSKRYSEKRKFGYVDPPKEDMPPEHLR
KIIKDHGDMSNRKFRHDKRVYLGALKYVPHAILKLLENMPMPWEEVRNVKVLYHITGAIT
FVNEIPLVIEPVYLAQWGSMWVTMKREKRDRKHFKRIKFPLFDDEEPPLDYADNILDVEV
EYAVQMELDPEDDKAVYDWFYDNKPLINTKFVNGPSYKKWRLDLPIMSTLYRLASPLLSD
LTDQNYFYLFDDKSFLTAKALNMAIPGGPKFEPLFRDMGDDDEDWNEFNDISKIIIRHKI
RTEYKIAFPYLYNNRPRQVSIPYYHHPPNCFTKTTNPEAVGFQYDPILYPIPSYKIDRSA
SIYGDEDDDFVLPEDVNPILLKSAQVNTENTLDGINLYWAPKPFNQRSGLTRRAEDVPLV
KAWYQERCPSQHPVKVRVSYQKLLKCYVLNKLHHRPPKSLNKKYLFKALKATKFFQTTEI
DWVEAGLQLCRQGYNMLNLLIHRKSLTYLHLDYNFYLKPIKTLTTKERKKSRFGNAFHLC
REILRMTKLVVDTHVKYRLGAAEAFQLADGLQYLFSHIGLLTGMFRYKYRLMRQIRMCKD
LKHLIYYRFNTGAVSKGPGCGFWAPTWRVWIFFLRGIVPLLERWLGNLLARQFEGRQYNT
TAKTVTKQRVESHYDIELRAAVMHDILDMMPEGIKANKSRVILQHLSEAWRCWKANIPWK
VPGLPVPIENMILRYVKNKADWWTNVAHYNRERIKRGATVDKTVCKKNLGRLTRLYLKAE
QERQHNYLKDGPYVSAEEGVAIYTTVVHWLEKRRFSAIPFPQTSYKHDIKILTLALERLK
EAYSVKSRLNQSQREELVLVEQAYENPHEALARIKRHLLTQRTFKEVGIEFMDYYTHLVP
VYSIDPFEKITDAYLDQYLWYEGEKRQLFPNWVKPSDNEPPPVLVHKWCQGINNLDGIWE
TANGECVVAMQTTLSKVYEKIDLTLLNRLLRLIVDQNLADYMSGKNNVVIAFKDMNHTNN
FGLIRGLQFASFIVQFYGLVLDLLILGLNRASEIAGPPQLPNPFLTYKDVETETKHPIRL
YQRYVDKLYVVFKFSSDETRDLIQKYMSEHPDPNNENVVGYNNKKCWPRDCRMRLMKHDV
NLGRAVFWNIKNRLPRSLTTIEWEDSFVSVYSRDNPNLLFSMNGFEVRILPKCRSPNDQI
IPKDSVWALQNINTRERTAQAFLRVDKESMDRYENRVRMILMASGSTTFTKIVNKWNTSL
IGLMTYYREAVVVTREMLDILVRCENKIQTRIKIGLNSKMPNRFPPVVFYTPKELGGLGM
LSMGHVLIPQSDLRYSKQTDSGITHFTSGMSHDEDQLIPNLYRYIQPWEQEIKDSQRVWA
EYALKYEEAKTQNKNLSIEDLEDSWDRGIPRISTLFQKNRHTLAYDKGWRVRTDWKQFQV
LKSNPFWWTNQRHDGKLWNLNNYRTDIIQALGGVEGILEHTLFKGTYFPTWEGLFWEKAS
GFEESMKFKKLTHAQRSGLNQIPNRRFTLWWSPTINRKNVYVGFQVQLDLTGIFMHGKIP
TLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDNLEIAVVNKEAIHPRKSYKMNSSCA
DILLRAAHKWQVSRPSVLQDTRDTYDGSTTQYWLDVQLKWGDFDSHDIERYSRAKFLDYT
TDSMSYYPSPTGCLVGIDLAYNIYSSFGNWFPGVKPLVQKAMDKIMKSNPALYVLRERIR
KGLQLYSSEPTEPYLSSQNYGELFSNKIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIF
IFNPRTGQLFLKIIHTDVWLGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIVVTRKGM
LDPLEVHLLDFPNIVIQGSELQLPFQACLKIEKFGDLILKATEPKMVLFNIYDDWLNSIP
SYTAFSRLILILRALHVNNERAKIILKPDKNTITQPHHIWPTLTDQEWIKVEVALKDLIL
ADFGKKNNVNVASLTQSEIRDIILGMEIAAPSQQREDQIAEIEKQKKESSQMTQMTVRTT
NVHGEEMISTTTSPHEQKVFSSKTDWRVRAISATNLHLRTNQIYVNCDTAKESSITYVIP
KNILKKFITIGDLRTQIMGYMYGVSPPDNPQVKEIRCIVMVPQWGTPVFVNVPNQLPEHD
HLKDLEPLGWIHTQPTELPQLSPQDAIMHGKLLADNKSWDAEKTIIAAVSVSWPCTLTPY
RLTPSGYEWARANKDSQNFSGFQPSHYEKVQTLLSDRFLGFYMVPDRGSWNYNFMGVKHS
ANMTYGLKLDYPKNFYDELHRPSHFQNWTQFDQKSSTNQDSEEVTNNADNENLFD
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaactactacttctaacaatagtagtagcgaaaataataatcaactcgatgat
tctaaattacaagagaaagcaaagaaatggttacaaataaattcaaagagatatagtgaa
aagagaaagtttggttatgtcgatccaccaaaagaagatatgccaccagaacacttgaga
aagattataaaggatcatggtgacatgtcgaatagaaagtttcgtcatgacaagcgtgtc
tatctcggtgcgttaaagtacgtgccacacgccattctcaagttgttggagaacatgcca
atgccttgggaagaggtgagaaatgtaaaggtgttgtatcacattaccggtgccattacc
tttgtcaatgagattccattggtcattgaaccggtgtatctcgctcaatggggttcaatg
tgggtcaccatgaagagagaaaaacgtgacagaaagcatttcaagcgtatcaaattccca
ctctttgatgatgaagagcctcctcttgactatgcagacaatattctagatgttgaagtt
gaatatgcagtacaaatggaattggatcctgaagatgataaagctgtctatgattggttc
tatgataacaaacctttaattaatactaaatttgttaatggtccaagttacaaaaaatgg
agattagatttaccaatcatgtcaacattgtatagattagcatcaccattgttgagtgat
ttgacggatcaaaattatttctatttgtttgatgataagagttttttgactgccaaggca
ctgaatatggctattccgggtggaccaaagtttgagccacttttccgtgacatgggagac
gacgatgaggattggaacgagtttaacgatattagcaagattatcatccgtcacaagatc
agaacagagtacaagattgcattcccgtacctctacaacaaccgtccacgtcaagtgagc
attccatactaccatcacccacccaactgttttaccaagacgaccaaccctgaagctgtc
ggattccagtacgatccaatcctctaccctatcccctcttacaagattgaccgttccgca
tcaatctatggtgatgaagacgacgactttgtgttgccagaagatgtcaaccctatccta
ctcaagagtgcacaagtcaataccgagaatacgttggatggtatcaacttgtactgggca
cccaaaccattcaaccaaagatcagggttgactagacgtgccgaagatgttccactcgtc
aaggcgtggtatcaagagagatgtccatctcaacatccagtcaaggtgcgtgtatcgtac
caaaagttactcaagtgttatgtactgaacaagttgcatcaccgtccacccaaatcactc
aacaaaaagtatttgttcaaggcattaaaggcaaccaagttcttccaaaccaccgagatt
gattgggttgaagctggtctccaactctgtcgtcaaggttacaatatgcttaatctactc
attcatcgtaagagtttgacctatctacatttggattacaacttttatctcaaaccaatc
aagacacttacgaccaaagaacgtaaaaagagtcgttttggaaatgcgttccatttgtgt
cgtgagattttgcgtatgaccaagttggtggtagacacgcatgtcaagtaccgtttgggt
gccgccgaggcattccagttggccgacggtctgcaatacctcttttcacatatcggtctg
ttgacaggtatgtttagatacaagtaccgtttgatgcgtcagattcgtatgtgcaaggat
ctcaagcatctcatctactaccgtttcaacacgggtgccgtgtccaaggggccaggctgc
ggtttttgggcgccaacatggcgtgtatggatctttttcctcagaggtatcgttccacta
ttggaacgttggttgggtaatttgttggcacgtcagtttgaaggtcgtcagtacaacacg
acggccaagacagtgaccaagcagcgtgtcgagtcgcactatgacattgagctgcgtgcc
gccgtcatgcacgacattttggatatgatgcccgaaggtatcaaagccaacaagtcacgt
gtcatcttgcaacatctcagtgaagcatggcgttgttggaaggccaatatcccatggaag
gtgcctggcctgcccgtccctatcgagaacatgatcttgcgttatgtcaagaacaaggcc
gattggtggaccaatgtagcacactataaccgtgaacgtatcaaacgtggtgctaccgtt
gacaagaccgtctgcaaaaagaatctcggtcgtcttacccgtctctacctcaaggctgag
caggaacgtcaacataattacttaaaggacggtccatacgtgtctgccgaagagggtgtt
gccatctacacgaccgtcgtgcattggctcgagaagcgtcgtttctcggccatcccattc
ccccaaacatcgtacaaacacgacatcaagatcctcacattggcactcgaacgtctcaaa
gaagcatacagcgtcaagagtcgtctcaaccagtcgcagcgtgaggaattagtactcgtc
gaacaagcgtacgagaatccacacgaggcattggcacgtatcaaacgtcaccttctcacc
cagcgtacattcaaggaagttggtatcgagtttatggactattacacacatcttgtgcca
gtctacagcatcgacccctttgaaaagattaccgatgcctatctcgatcaatacctgtgg
tacgaaggagagaagcgtcagttgttccccaactgggtcaaaccatccgacaatgaacca
cctccagtactcgtacacaagtggtgtcaaggtatcaacaacctcgacggtatctgggag
actgccaacggcgagtgtgtcgttgccatgcaaactactctctccaaggtctatgaaaag
attgatctcacacttctcaatcgtctcttgcgtcttattgtcgatcagaatcttgccgat
tacatgtcgggcaagaacaatgtagtcattgcattcaaggatatgaaccataccaacaac
tttggtttaattcgtggtttgcaatttgcatcgtttatcgtacagttttacggtcttgtt
ttggatctcttgattcttggtttaaatcgtgccagcgaaattgccggtcctccacaactt
cccaaccccttcctcacgtacaaagatgtcgagaccgagaccaaacaccctatccgtctt
taccaacgttatgtcgacaagctctacgttgtattcaagttctcatcagatgaaactaga
gatttgatccaaaagtacatgtcagagcatccagatcccaacaatgaaaatgtggttggt
tataataacaaaaagtgctggccaagagattgtcgtatgcgtctgatgaaacatgacgtg
aatcttggtcgggctgtcttttggaatatcaagaatagactgccacgttcacttacaacg
atcgagtgggaggacagctttgtatcagtctactctcgtgataatcccaacttactgttt
agcatgaatggatttgaagtacgtattctaccaaagtgtcgatcaccgaatgaccagatc
atccccaaggacagtgtatgggcattgcaaaacatcaacactcgtgagagaactgcacag
gcattcttacgtgttgacaaggagtcgatggacagatacgagaatcgtgttagaatgatt
ttgatggcgtcgggtagcaccacgtttaccaagattgtcaacaagtggaacacgtcgttg
atcggtctcatgacctactaccgtgaagcggttgttgtcacacgtgaaatgctcgatatt
ttggtgcgttgcgagaacaagattcagacacgtatcaaaattggactcaattccaagatg
ccaaaccgtttcccaccagttgtcttttacacacccaaagagttgggtggtctcggtatg
ttgtctatgggacacgtactcattccccagtcggatctcagatactccaagcagaccgac
tctggcattacccatttcacctcgggtatgtcgcacgacgaagaccagttgattcccaat
ctctaccgttacatccaaccttgggaacaagagatcaaggactctcaacgtgtctgggct
gaatatgcactcaaatacgaagaggccaagacacaaaacaagaatctttcgattgaagat
ttggaagattcatgggaccgtggtattccacgtatctcgacactcttccaaaagaatcgt
catactcttgcctatgacaagggatggcgtgttagaaccgattggaagcagttccaggtt
ctcaagagcaacccgttctggtggaccaaccaacgtcacgatggtaaactttggaacctc
aacaactaccgtaccgatatcatccaagcacttggtggtgtagagggtatcctcgaacac
accctcttcaagggcacttacttccccacttgggaaggtctcttttgggaaaaggcatcg
ggttttgaagagtcgatgaagtttaaaaaattgacacatgctcagcgttctggtttgaat
caaattcccaatcgtcgttttacactttggtggtcaccaaccatcaacagaaagaacgtc
tatgttggtttccaggtgcaattggatttgacaggtatttttatgcatggtaagatcccc
actctcaagatttcgctcatccaaatcttccgtgctcatttgtggcaaaagattcacgag
tctgttgttatggatctttgtcaggtgtttgatcaagagttggacaacttggagattgca
gtcgtcaacaaggaagcaatccatccaagaaagtcgtacaagatgaacagctcgtgcgca
gatattttgttgcgtgctgctcacaagtggcaagtgtcacgtccatccgttctacaagac
acacgtgatacgtatgatggcagcaccacacagtactggttggacgtacagctcaaatgg
ggtgactttgacagtcacgacattgaacgttacagtcgtgccaagttcctcgactatacc
accgacagtatgtcatactacccatcaccaactggttgtctagttggtattgacttggca
tacaatatttacagttcctttggtaactggttcccaggtgtcaagccactcgttcaaaag
gcaatggacaagatcatgaagtccaatccagcactctatgtgttgcgtgagcgtatccgt
aagggtttgcaactctactcgtctgaaccaaccgaaccatacctctcttcacaaaactat
ggagagttgtttagtaacaagattatctggtttgtcgacgataccaatgtctaccgtgtc
actattcacaagacattcgaaggtaatttgacaaccaaaccaatcaatggtgccatcttt
atctttaaccctagaaccggtcagttgttcctcaagatcattcacactgacgtatggctc
ggtcaaaagcgtctcggccaacttgccaaatggaagacagccgaagaagttgccgctctc
attcgttcgttgcctgttgaagaacagcccaagcaaatcgtcgttacaagaaagggtatg
ctcgatccactcgaagtgcatcttttggatttccccaacattgtcatccaaggcagtgag
ttgcaactccccttccaagcctgtctcaagattgaaaagtttggtgatcttatcctcaag
gcgaccgagcccaagatggtgttgttcaacatctacgacgattggctcaactcgatccca
tcgtacacggccttctcacgtctcatcctcatcctgcgtgcattgcacgtcaacaatgag
cgtgccaagatcatcctcaagcccgacaagaacaccatcacccaaccacaccacatctgg
ccaactcttaccgatcaagagtggatcaaggtcgaagtggcgctaaaggacctcatcttg
gccgattttggtaaaaagaataatgtcaatgtcgcatcgttgacacagagtgagatcaga
gatatcatcctcggtatggagattgccgccccatcccaacaaagagaagaccaaattgcc
gagattgaaaagcaaaagaaagagtcgtcacaaatgacccaaatgactgtgcgtaccacc
aacgtgcacggtgaggagatgatctcgaccaccacctcgccacacgagcaaaaggtgttc
tcttccaagactgactggcgtgtacgtgccatttcagccaccaacttgcatctccgtacc
aaccagatctacgtcaactgtgatactgccaaggaatcatccatcacctatgtcattccc
aaaaacatcctcaaaaagtttattacaattggtgatcttcgtactcaaatcatgggctac
atgtatggtgtgtcgccacccgacaatcctcaagtcaaggagattagatgtattgtcatg
gtgccacaatggggtacacccgtctttgtcaatgttcccaaccaactccctgaacacgac
catctcaaggacctcgaaccactcggttggatccatacccaacccactgaactcccacaa
ctgtcacctcaagacgccatcatgcacggcaagctactcgccgacaacaaatcgtgggat
gccgaaaagactattatcgccgccgtctctgtctcgtggccatgtactcttacgccctac
cgtctcactccatctggttacgaatgggctcgtgccaacaaggactctcaaaacttttca
ggattccaaccttctcactatgaaaaggttcaaactctactctctgatagattcctcggt
ttctacatggtgcccgatcgtggtagttggaattataactttatgggtgtcaaacattct
gccaatatgacatacggtctcaaattggattatccaaagaacttttacgatgaactacat
agaccttcacatttccaaaattggactcaatttgatcaaaaatcatcaaccaatcaagat
agtgaagaagtaactaataatgctgataatgaaaatttattcgattaa
DBGET
integrated database retrieval system
