Cavenderia fasciculata (cellular slime mold): DFA_08560
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Entry
DFA_08560 CDS
T02668
Symbol
helB1
Name
(RefSeq) putative RNA helicase
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DFA_08560 (helB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dfa03041
]
DFA_08560 (helB1)
Enzymes [BR:
dfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DFA_08560 (helB1)
Spliceosome [BR:
dfa03041
]
Complex A
U2 snRNP components
U2 related factors
DFA_08560 (helB1)
Complex B
DFA_08560 (helB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
KH_12
Helicase_C
Hmw_CFAP97
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
14868751
NCBI-ProteinID:
XP_004356048
UniProt:
F4Q300
LinkDB
All DBs
Position
Unknown
AA seq
923 aa
AA seq
DB search
MDHSEVGKRKRGGEEEQGGGGRQMDRDNRDYGRGGSYDRGGRGGGGDRYYNNNDRRGGGY
YDDRSYNNNRRYEDRQQPYRGGGGGYYDDRDRRDYNRGGGYHDNRDNRDRRDYNDHYNNS
NNNRYNNNNDNRQQSSRDGRDNNNNNSNQQSPPLQPAVVLPVVPPKDPEQLEREREEERK
REQEKLEEEMRKRREKVEQWRKEKLAAEETKQTSADVTSMPPPTAVAAAGAAAPPTSKWN
LEDEDQEDTNAAAAAAAAAAAAKAAAAASSKMEEDDEDPLDAYMNQLAKKEYQQTQQKQE
QIKQQNEQLQEQLKQQQEKNENGDNTTTVAMDTAAASPPIKTTITIGPISIPKGEVLGND
GELDGEEEEDDDEGIENGEEKEVKKGKKEILSTDHSKEDYIEFQKDFYVEVPTLSNMTET
EVKDYRYELGVKITGKNCPKPIQTWAQCGLSDKIHALLKKYNYEKPTTIQAQTIPAIMSG
RDMIGIARTGSGKTLAFLLPMFRHVMAQEKPKQGEGMVGLIMSPTRELALQIYSECKKFS
KILGLRVCCVYGGANIGEQIADLKRGADIVVCTPGRMIDILCANNKRITNLKRVSFLVLD
EADHYVHRVGRTGRAGNKGTAYTFITPEEERFAPSIAKALEQSGSKVPDELTKLCSDYQK
KRSEGKEVLVAGSGFLGRGHKFDAAEEAKKKEERKKQRRAYGIDEDEDEDETKPTLEEVA
TPPPTASTTDSPTGATTSTTSPTGTTATTTTTAATDTTSTVLGTDPTMSAGQQALSQIFG
GNAPQMKAEDAIKALQLAAAQKAQKMQQVAQLAAAQAAALVNANSPASFNDDLEINDYSQ
QARWKVTHKDSLLHITEMTQTAITTKGTFFPPGKTVPAGEKKLYLFIEGPSDAQVRTAKT
EIKKILEEVHLISHNEKGKYSVF
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atggaccactctgaagttggaaagagaaagagaggaggcgaagaggaacaaggaggagga
ggtagacagatggacagagacaacagggattatggtcgaggaggatcatatgacagagga
ggtagaggtggaggtggtgatcgttactataataataatgatcgtagaggaggaggatac
tatgacgatagatcatataataataatagacgctatgaagatagacaacaaccatatcgt
ggtggcggtggaggatactatgatgacagagatagaagagattataatagaggaggagga
taccatgacaaccgtgataatagagatagaagagattataacgatcattacaacaacagt
aataataatagatacaacaacaacaatgacaatagacaacaatcatctagagatggtaga
gacaataataataacaactcgaatcaacaatcaccaccattacaaccagcagtagtatta
ccagtagtaccaccaaaagatccagaacaattggaaagagaaagggaagaggaacgaaaa
cgtgaacaagaaaagttggaagaagagatgagaaagcgtcgtgaaaaggtggaacaatgg
agaaaggagaagttggcagctgaagaaacaaagcaaacatctgcagatgtcacatctatg
cctcctccaacagccgttgcagcagctggagcagcggcaccaccaacaagcaaatggaat
ttggaagatgaagatcaagaagatacaaatgcagcagcagcagccgcagccgcagcagca
gcggcaaaagcagcggcagcagcatcatcaaaaatggaagaagacgatgaagatcctctc
gacgcatatatgaatcaacttgccaaaaaagaataccaacaaacacaacaaaaacaagaa
caaatcaaacaacaaaatgaacaattacaagaacaacttaaacaacaacaagaaaagaat
gaaaatggtgataatacaacaactgttgcaatggatacagctgctgcatctccaccaatc
aaaacaacaattactattggacctatatcaataccaaagggtgaagttttaggaaatgat
ggtgaattggatggtgaagaggaagaagacgatgatgaaggaatagaaaatggtgaagaa
aaggaagttaaaaaaggaaagaaagagatcttgtcaactgatcattcaaaagaggattat
atcgaattccaaaaagacttttatgtcgaagtgccaacactatcaaatatgacagaaact
gaagtcaaagactatcgttatgaattgggtgttaaaataactggaaagaattgtccaaaa
ccaattcaaacttgggctcaatgtggtttatctgataaaatacatgcattacttaaaaaa
tataattatgaaaaaccaacaactattcaagcacaaacgattccagcaattatgagtgga
cgtgatatgattggtattgcaagaactgggtctggtaagacattggcttttctattgcca
atgtttagacatgtcatggcacaggagaaaccaaagcaaggcgagggtatggtcggactg
atcatgtcgccaactcgtgaattggcattgcaaatctacagtgaatgcaaaaagtttagc
aagatattgggattgcgagtgtgctgtgtgtatggtggtgccaacattggtgaacagatt
gctgatctaaagagaggtgctgatattgtagtgtgcacacctggacgtatgattgatatt
ttgtgcgccaataataagcgtattaccaatctcaagcgtgtgtcattcctcgtgttggat
gaagccgatcactacgtgcaccgtgtcggaagaacggggcgtgcgggcaacaagggcacc
gcatacacctttatcacacccgaagaggagcggttcgcgccgagtatcgccaaagcgctc
gagcagtcgggctccaaggtgcccgatgagctcaccaagctctgctccgactaccaaaag
aaacggtccgagggcaaggaagtgctcgttgccggcagcggtttcctcggtcgtggacac
aagtttgatgcagctgaagaggccaaaaagaaggaagagagaaagaaacaacgtcgtgca
tatggtatcgatgaggatgaggatgaagatgagactaaaccaactcttgaagaggttgct
actccccctcccactgcatctacaaccgactcgccaaccggtgctacaacatcgaccaca
tcgccaactggcacgactgctaccaccactacgacagcagcaaccgatacaacaagcacg
gttttgggaaccgacccaaccatgtctgctggtcaacaagcactgtcacaaattttcgga
ggcaatgcgccacagatgaaggcagaggatgccatcaaagcactccaactcgcagctgct
cagaaagcacagaaaatgcaacaagttgctcaattggcagcagcacaggcagcagcattg
gtcaatgccaactcacccgcctcctttaacgatgatcttgaaatcaacgactactcacaa
caagcacgttggaaggtcactcacaaagactcgttacttcacattacagaaatgacccaa
actgccatcaccaccaaaggtactttcttcccacccggcaaaacagtaccagccggagaa
aagaaattgtatctctttatcgaaggtccatcagacgcccaagttagaactgcaaagact
gaaatcaaaaagattctagaagaagttcatcttatttctcataatgagaaaggaaaatat
tctgtcttttaa
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