Cavenderia fasciculata (cellular slime mold): DFA_08643
Help
Entry
DFA_08643 CDS
T02668
Symbol
sf3b3
Name
(RefSeq) CPSF domain-containing protein
KO
K12830
splicing factor 3B subunit 3
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DFA_08643 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dfa03021
]
DFA_08643 (sf3b3)
03041 Spliceosome [BR:
dfa03041
]
DFA_08643 (sf3b3)
03036 Chromosome and associated proteins [BR:
dfa03036
]
DFA_08643 (sf3b3)
Transcription machinery [BR:
dfa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
DFA_08643 (sf3b3)
Spliceosome [BR:
dfa03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
DFA_08643 (sf3b3)
Complex B
DFA_08643 (sf3b3)
Complex C
U2 SnRNP specific factors
DFA_08643 (sf3b3)
Chromosome and associated proteins [BR:
dfa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
DFA_08643 (sf3b3)
TFTC complex
DFA_08643 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
14868819
NCBI-ProteinID:
XP_004356131
UniProt:
F4Q3I9
LinkDB
All DBs
Position
Unknown
AA seq
1194 aa
AA seq
DB search
MYLYNLTLQKSTAIFQSVSGNFSGSKAVEIIVSNGHALELLRPDDSGRLDHVLYSEAFGV
IRSIAPFRLTGGSKDYLIVGSDSGRVVILEYNPSKNVFEKVHQETFGRSGCRRIVPGQYI
STDPKGRAFMIGAIEKQKLVYILNRDSQAKLSISSPLEAHKAHTIVFSMCGVDVGFENPI
FATISVDYSEETNIEDVEETHNTKVLTFYELDLGLNNVVRKWSEEVDRSANLVVSVPGGS
DGPGGVLVCAQGRVYYRNIGHADISVSIPRRNGMTEEKSLMIVSHASHKQRDMFFFLVQS
EYGDLYKITLDYSGEMVSGMQIAYFDTFPTANCITMLKNGFLFVASEFGDHGLYLFKSLG
LDDAPTASSAGNTEMVFFEPVFEPRNLVLTATISSLSPIVDFKVADLAQEGTPQMYALSG
VSERANLRVLRHGLPITQMVDSQLPGTPAGIWTIPQSLTTMRNPQYQGIGTVESPADRYI
VVSFVGSTLVLGVGETVEEVQDSGILSTTTTILIRSMGANLDSIVQIFAQGIRHINAERR
VSEWRAPGRKTISIAAANQQQVIICIGGSEIIYFELDPAGNLTEVFKKDMRKDINCIEFA
PIPRGRTMSRFVAISDYDGPVRILSLERDNMLNQVSMVDTDRQQVEQLCVAELMVHEPGV
DQQIVNTQRQGTLFLHIGLKNGVLKRAVLDGLTGEISDMRTRILGRRPIKFFRVKIKGSP
AVLALSTRVWMCYSNLGRYEITPLSVEPLDHAASLSSDQCPEGIVATSENNLKIFSIEKL
GDLFNQVQIPLSCTPKRFVVHPQTNYIVSIETEHNFSTQFEPELAQDLEMPRAGKGKWKS
VIRILDPVSNQTLDLVSLTNNEAAFSIGTVMFQEGEVMLAVGCAKDVQLQPRGFSSASIH
LYQFVENGQKLALVHTTETDLIPHAVGSFQGKLIAGVGNVLRLYELGKKKLLRKCENRKV
PNQITSIQSQGDRIVVSDVQESVHFFTYRRSENVLVLFADDTAPRFVTSCVMLDFDTVAI
ADKFGTIAVVRMPPSSDTDIDIENELDIGTLTTKSKLALNGAANKLELVASFYVGETCCN
LTRTSLMVGGSEVIIYTTLGGAIGALIPFSSREEVDFFAQLEMQMRQEKESLCGRDHLSY
RSYYFPVKNVIDGDLCEQYSTLDATKQRSVAEELIRNPSEVLKKLEDIRSQKLL
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgtatctttataatcttacattacaaaaatcaacagcaatctttcaatcagtaagtgga
aacttctcaggatcgaaggcagtagaaataatcgtatcgaatggacatgcattagagttg
ttgagacccgatgactctggtcgattggatcacgtgttgtatagtgaagcatttggtgtc
attcgttcaatagctccttttagattgactggtggttcaaaagactatctcatcgttggt
agtgacagtggtcgtgttgtcattctcgaatacaatccatcaaagaatgtctttgaaaag
gtacatcaagaaacatttggtagatcaggttgtcgtcgtatcgtaccaggtcaatatatt
tcaactgatccaaaaggaagagcttttatgattggagcaattgaaaaacaaaagttggta
tatattttaaatagagattcacaagctaaactatcgattagttcacctttggaagcacat
aaagcacatacgatcgtattctcaatgtgtggtgtagatgttggctttgagaatccaatc
tttgcgaccatctcggtcgactattcggaagagacaaatatcgaggacgttgaggagact
cacaacacaaaggtattaacattctatgaattggatttgggtctcaataatgtggttaga
aagtggagtgaagaggtggatagaagtgcgaatctagtcgtgtcggtgccaggtggctcg
gatggcccgggtggtgtgttggtgtgcgcacaaggtcgtgtatactaccgcaacatagga
catgccgacatatcagtatcgatcccacgtcgcaatggaatgactgaagaaaagtcactc
atgatcgtgtcgcatgcatcacacaagcagcgtgacatgttctttttcctcgttcaaagc
gagtatggagatctctacaagattacattggattattcaggagagatggtgtcgggtatg
caaatcgcctattttgacacattcccaacagccaactgtattacaatgctcaagaatgga
tttttgtttgtggcgtcagagtttggcgatcatggactctacctgttcaagtcgttgggt
ttggatgatgcaccgacggcctcttcggccggtaacactgagatggtgtttttcgagcct
gtctttgagccgcgcaacttggtgctgacggcaaccatctcgtcgctgtcaccaatcgtc
gactttaaggtggccgatcttgcacaagagggaacaccacagatgtacgcgttgtcgggt
gttagcgagcgtgccaacctgcgcgtgttgcgtcacggactgcccatcacgcagatggtc
gactcgcagttgcccggcacgcccgcaggcatctggacgattccacagagcttgacgacg
atgcgtaacccgcagtaccagggtatcggcacggttgagagcccggccgaccgctacatt
gtcgtgtcgtttgtcggtagcacgttggtgctcggtgtcggcgagacggtcgaggaggtg
caagattcgggcatcctctccaccaccaccaccatcctcatccggtcgatgggtgccaac
ctcgactcgattgtacagatattcgcacagggcatccgtcacatcaacgccgagcgtcgt
gtcagcgagtggcgcgcacccggaagaaagaccatctcgatcgccgcagccaaccaacaa
caagtcatcatctgtatcggtggcagcgagattatctactttgaactagaccccgctgga
aacttgacagaggtctttaaaaaggacatgcgtaaggacattaattgcatcgagtttgca
ccgatcccacgcggtcgtacaatgtctcgatttgtagcaatatcagattatgacggacct
gtccgtatactctcgttggaacgtgacaatatgctcaaccaagtgtcaatggtagacact
gatcgtcaacaagttgagcaactatgtgtcgctgaactcatggtacatgaaccaggtgtc
gaccaacaaattgtaaacacacaacgtcagggtacactattcctccacattggtctaaag
aatggtgtgctaaagagagcagtcctcgacgggttgacaggtgagatatcagacatgcgt
acacgtatccttggacgtcgtcccatcaaattctttagagtcaagatcaagggcagtcct
gccgtccttgcattatcgactcgtgtgtggatgtgttattccaacctcggtcgatatgaa
atcacccctctctctgtcgagccactcgaccacgccgcatcactttcctcagatcaatgt
cccgaaggtattgtcgccaccagcgaaaacaacctcaagatcttttccattgaaaagttg
ggcgacctctttaaccaagtgcaaatcccactctcttgcacacccaagcgattcgtcgtt
catccccaaaccaactatattgtctcgatcgagactgaacacaattttagcactcagttt
gaacccgaactcgcacaagatctcgaaatgccacgtgctggaaagggcaagtggaagtcg
gtcattcgtattttagatccagtatcaaaccaaacattggatcttgtatctctcaccaac
aatgaagctgcattctcaattggaacggtcatgttccaagaaggtgaggtcatgttggct
gtaggatgtgccaaggatgttcagttgcagccacgtggattctcgtccgcatctatccat
ctctaccagtttgtcgagaatggacaaaagctggcgttggtgcacaccaccgagacggat
ctcatcccccacgcagtcggctcgttccaaggcaagctgattgccggtgttggcaacgta
ctacgtctctacgagctcggaaaaaagaagttgttgagaaaatgtgagaatagaaaggtg
ccaaaccaaatcacatcgatccaatcgcaaggtgacagaatcgtagtgtctgacgtccaa
gagtcggtacactttttcacataccgtcgctccgagaatgtattggtgttgtttgccgac
gacaccgcgccacgttttgttacgtcgtgtgttatgctcgattttgacacggttgcgatt
gccgacaagtttggaacgattgcagttgtacgtatgccacctagcagcgacactgacatt
gacattgaaaatgaattggatattggaacgttgacgaccaagtccaagttggcacttaac
ggtgcagcaaacaaactcgaactagtcgcttctttttatgttggtgagacttgttgcaat
ctgactcgtacctcgttaatggtcggtggcagtgaagtcattatctacaccacactcggc
ggcgctattggtgcattgatcccattcagctctcgagaggaagttgatttctttgcccaa
ctggaaatgcaaatgcgtcaagaaaaggagtcattgtgcgggcgtgaccatctctcctat
cgttcctactatttccctgttaaaaatgtcatcgatggcgatctttgtgaacaatactct
accctagatgccaccaaacaaagatcagttgctgaagagttaattcgaaatccatctgaa
gttttaaagaaattagaagatataagatcacaaaaattattataa
DBGET
integrated database retrieval system
