Cavenderia fasciculata (cellular slime mold): DFA_08780
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Entry
DFA_08780 CDS
T02668
Name
(RefSeq) hypothetical protein
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfa03019
]
DFA_08780
Enzymes [BR:
dfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DFA_08780
Messenger RNA biogenesis [BR:
dfa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
DFA_08780
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
ResIII
Helicase_C
PIN-like_DDX60
GBR2_CC
Motif
Other DBs
NCBI-GeneID:
14869433
NCBI-ProteinID:
XP_004356264
UniProt:
F4Q478
LinkDB
All DBs
Position
Unknown
AA seq
1683 aa
AA seq
DB search
MSDPPTTITETENEEIEIETETTTTTTTTEPFIPQWKKTDNWEDMFDFIEGDIFSDFGRG
EEFLIDGDSLLLYLVAIENEIEKDHLKGLIGRKRNNTERDESIFAAKHSQQTLHLIFKFE
KFLNSLLQRKAKFSIIFLSKNDRFYKSSSLVLVRRLIINSYKDNISLPFGFKVFDQEWFS
QEIGSFNPLFDYFKSKTFSFLLVLPPVVNNLRLINDLFNMNAIQLFTKKSTEYFSHFVDL
ISSEFRGSTMNSYIYTFRKNIIFSPQLQSTIQQEICQVNSVTSSVGNQKKSTITELEKEL
DTIGQLNYRNLLTLLSILDLGKVDISSFLLKSLSVYLVIMNNLPLSKRSFDSLDYEPIEF
IQLFQDLCRPMLCYLGNNKKDQFTFDLVDVKQYSFIALILCNSTGGSWSNLIGQELFLAS
KSILEILKKFGPSSWSSINFVEQGVEEKFIFSTQPEYNQYEKVLTKIQTNSHLNDNKNMD
LYKVDNEFISAIVGDSQKDLVFQSTIPQEIQDRQNALPEFYNISHHHSLRLLENLPDAYL
ETIKENRQANKPISKKFADKMKHGAANKFFRIADSLYDSKKKIVITELDKDVKEVAKQKQ
SHQVNKQHDKMKKLKKKDEVKERADKKQQEKAKAFSKQMRASTVLEIVDSIDLYIANEIV
EHNEFSLDKDTMDQLFKGMERINKKYSSQEKEKLKLYQLLQKILRLLDSKQIKPEKGQEI
NLYQSLYHLSLLLNLYDLTNYINDRFSLKNKEKKEKQQSFENSAIVYQMTHSHTTLVRSI
GQRKDERVKTFIPDAWQRDLLDVVDKHESALVVCPTSSGKTFISFYILEKVLRESNDGMA
IYVSPTKALVTQTYCEVIGRFDKSYDNICGKDSSAQYRMCGIFTRDYRIDEQKCQILITV
PQCLELLLLSVSNSNYLSKIKYIIFDEVHQIANGTEGAIWESLLLLNPGPFVALSATVGN
TGEFKDWLQEIDPKRKIHLVQHSNRFNDLKHYQYDHDNLQLLPHHPCETLRINKSTEQLF
LLSEEAIQLYQHIKSSFKQLDNEIGELDPIKVFTRVSNNNNVYNLNKQDIKDYQRALLDL
VESRLKSDEFSAFMSEHYPEKHLRHDDWRSRVPEVIMDLKKRDMLPVIVFCLSRRICEKL
ALALEEHIDKMHYDPKKQQKIDLLEKKIEQVKLEIKTVNPTQDDDIFQDLEKLTSTLSLL
VSRKPEFGTILTDDVHDPKGKIKKLDLFGPLMEGIGVHHAGLPKDYLENVEVLYRRKKIS
VIFATGTLALGINMPCRTVVVAGDSPYLNSLSFRQMAGRAGRRGFEDRGNVIFLGISDTR
AQKLINSNLSDIVGNSVLTPSLCLKILCRYNFFQLEKQTDLNEKHVQELIFATQKVVGKS
FFMKRSPFQNPFMFLFSLDYLFRQGYLSQNGQALGYASIATHLSYLQPFNFVVCRLFRDQ
VFGDFLGKSKYDEREILHILCYLFNRKEIPNIIDIDKCPSKITLPKLPNNVITSINKNNQ
EVIDTFVAYVAGLQKKLPLVYMPISKSMDEQFTKEEENTIDQSNSHTTWFNTIDNYIEKK
PQLKKSITSLAGSCNNIVDTTTLQHSMPPGTFFDQSVLPICNINTKQANSYLLDLYKHKQ
VNTVIECNHIPKGEIFELTKDFALTLKVLSTSLLRIDKDSNVAKSFETLANNYSRLFNQL
FLN
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatcctccaacaacgataacagaaacagagaatgaagaaatagaaatagaaaca
gaaactacaactactacaactacaaccgaaccattcattccacaatggaaaaaaacagac
aattgggaagatatgtttgattttattgaaggtgatatttttagtgattttggtagaggt
gaagaatttttaattgatggtgattcattattactatatcttgttgcaattgaaaacgag
attgaaaaggatcatttaaagggtcttattggtagaaaaagaaataataccgaaagagac
gaatcgatctttgctgcaaaacactctcaacaaactcttcacttgattttcaagtttgag
aaattcttgaatagtcttttacaaagaaaggcaaagtttagtatcatctttttatcgaaa
aatgatcgtttctataaatcctcttcattggtattggttagaagattgattatcaattcc
tataaagataatattagtttgccatttggttttaaagtttttgatcaagaatggtttagt
caagaaattggttcttttaatcctttattcgattattttaaatcaaaaactttttcattt
ttattagttttacctccagttgtaaacaatttgagattaattaatgatttatttaatatg
aatgcaatccaattatttacaaaaaaatcaacagaatatttttcacattttgttgattta
atatcatcagaatttagaggatcaacaatgaattcatatatttatacttttagaaaaaat
attatattttcaccacaattacaatcaactattcaacaagaaatttgtcaagtaaattcc
gtaacgtcgtcggttggtaatcaaaaaaaatcaaccatcaccgagttggaaaaggaattg
gatactattggacaattaaattatcgtaatcttttgacattgttatcaattttggatctt
ggcaaagttgatatatcgtcatttttattaaaatcattatcagtctatttggtgattatg
aataatttaccactttcaaagagatcatttgatagtttggattatgaaccaattgaattt
attcaattgtttcaagatctttgtcgtccaatgctatgttatttgggtaacaacaaaaag
gatcagttcacttttgatttggtagatgttaaacaatattcatttattgctctcattctt
tgtaattcaactggtggttcttggtcaaatttaattggtcaagaattatttttggctagt
aaatcaattttagaaattctaaaaaagtttggtccatcatcttggtcaagtatcaatttt
gttgaacaaggggtagaggagaaattcattttttcaactcaaccagaatataatcaatat
gaaaaagtattgactaaaattcaaacaaatagtcatttaaatgacaacaagaatatggat
ttatacaaggttgataatgaatttatttctgccattgtgggagattcacaaaaggatttg
gttttccaatcaaccattccacaagaaattcaagatcgtcaaaatgcccttccagaattt
tacaacatctctcatcatcatagtcttagattactcgaaaatctaccagatgcctatctt
gaaacaatcaaggaaaatcgtcaagcaaacaaaccaatttcaaaaaaatttgctgataaa
atgaaacatggtgctgcaaataaattttttagaatagcagatagtttatatgatagtaaa
aaaaaaattgttattacagaattggataaagatgtaaaagaggtagcaaaacaaaaacaa
agtcatcaagtaaacaaacaacatgacaagatgaaaaagttaaagaaaaaggatgaggta
aaggaaagagccgacaagaaacaacaagaaaaggcaaaagcattctcaaaacaaatgaga
gcatcaaccgttttggaaattgttgatagtattgatttgtatattgccaatgaaattgtt
gaacacaatgaattttcattggacaaggatactatggatcaactattcaaaggaatggaa
agaatcaacaaaaagtattcgagtcaagaaaaggaaaaacttaaactctatcaattgtta
caaaagattcttagattgttggattcaaaacaaatcaaacctgaaaagggtcaagaaatc
aatctctatcaatcattgtatcatttatcattgctactcaatctctacgatctcactaat
tatataaatgatcgattctctcttaaaaacaaagagaaaaaagaaaaacaacaatcattt
gaaaactctgcaatcgtttatcaaatgactcactcccatactactttggttagatcaatt
ggacaaagaaaggatgaaagagtaaaaactttcattccagatgcatggcaaagagatctt
ttagatgtggttgataaacatgaatctgctcttgttgtttgtccaacaagtagtggtaaa
acatttattagtttttatatccttgaaaaggtattaagagaatcaaatgatggtatggca
atctatgtcagtcctacaaaggctttggtcactcaaacttattgtgaagttattggtaga
tttgataaatcttatgataatatttgtggtaaagattcttctgctcaatatagaatgtgt
ggaatatttacaagagattatagaattgatgaacaaaaatgtcaaattttaattacagta
ccacaatgtttagagctgttattactttcagtatcaaattcaaattatctttcaaagatt
aaatatattatatttgatgaagttcatcaaattgcaaatggtacagagggtgctatttgg
gaaagtttactcttgttgaaccctggaccatttgtagccttgtctgcaactgttggaaat
acaggtgaatttaaagattggttacaagaaattgatccaaagagaaaaattcatttggtt
caacatagtaatagatttaatgatttgaaacattatcaatatgatcacgataatctacag
ttattacctcatcatccatgtgaaacattacgtatcaacaaatcaacagaacaattattc
ttattgtctgaagaggccattcaactatatcaacacatcaaatctagttttaaacaactt
gacaatgaaattggtgaattggatccaatcaaagtattcacccgtgtctctaataacaac
aatgtttataatctaaacaaacaagatattaaagattatcaaagagctttattggatttg
gtagagtcaagattaaagagtgatgaattttcagcattcatgtctgaacattatccagaa
aaacatttacgacacgatgattggagaagtagagtaccagaagtgattatggatttgaaa
aaaagagacatgttgccagttatcgtattttgtctctctagaagaatttgtgaaaagctt
gcactcgctctcgaggaacatattgacaagatgcattatgatccaaagaaacaacaaaag
attgacttgttagagaaaaagattgaacaagttaaattggaaatcaagactgtcaacccg
actcaagacgatgatatctttcaagatttggaaaagttgacatcgactctctccctactc
gtctctagaaagccagagtttggtaccatcttgacagatgatgttcacgatccaaaagga
aagatcaagaaattggatttgtttggtccactcatggaaggaattggagtgcatcatgcc
ggtctaccaaaagattatttggaaaatgtcgaagtcttgtatagaagaaagaagatttca
gtcatttttgctaccggtacgttggcacttggtatcaatatgccatgcagaaccgttgtt
gtcgcaggtgattcgccatacctcaactctctttcattccgtcaaatggctggtcgtgcc
ggtcgtagaggttttgaagatagaggtaacgtcatctttttgggcatctctgatacacgt
gctcaaaagttgatcaactctaatctttcagatatcgttggaaacagtgtcctcacacca
tccctctgcctaaagattctttgtcgttacaatttcttccaactcgaaaagcaaaccgac
ctcaacgaaaagcacgttcaagaactcatctttgccactcaaaaggtggtaggcaagagt
ttctttatgaaacgttctccattccaaaatccattcatgtttttattcagtttggattat
ctctttagacaaggatacctttctcaaaatggtcaagctcttggttatgcttccatcgcc
acccatctctcctacctccaacctttcaactttgtcgtctgtcgtctctttagagatcaa
gtatttggtgatttccttggtaaatcaaaatatgatgaaagagaaatcttacatattctt
tgttatctttttaatagaaaagaaattccaaatattattgatattgataaatgtccatca
aagattacattaccaaaattaccaaataatgtaataacttcaatcaataagaataatcaa
gaagtgattgatacatttgtagcctatgttgctggtttacagaaaaaactaccacttgtt
tacatgccaattagtaaatcgatggatgaacaatttaccaaggaagaggaaaatactatt
gaccaatccaatagtcatactacttggtttaataccattgacaattatattgaaaagaaa
ccacaactaaagaaatcaattacatcacttgctggtagttgtaataatattgtcgatact
acaacactccaacattcaatgccaccaggaacctttttcgatcaatcggttctaccaatt
tgcaacattaacaccaaacaagcaaattcttacttgctcgatttgtacaagcacaagcaa
gtcaacactgtcattgaatgcaaccatatccccaagggagagatctttgagttgaccaaa
gactttgccctaactctcaaggttctctctacttctctacttagaattgacaaggattca
aatgttgccaaatcttttgaaacattagcaaataattattctcgtttgttcaatcaactt
ttcttaaattaa
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