Cavenderia fasciculata (cellular slime mold): DFA_09898
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Entry
DFA_09898 CDS
T02668
Symbol
ddx3
Name
(RefSeq) putative RNA helicase
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfa03019
]
DFA_09898 (ddx3)
03041 Spliceosome [BR:
dfa03041
]
DFA_09898 (ddx3)
03036 Chromosome and associated proteins [BR:
dfa03036
]
DFA_09898 (ddx3)
Enzymes [BR:
dfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DFA_09898 (ddx3)
Messenger RNA biogenesis [BR:
dfa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
DFA_09898 (ddx3)
mRNA cycle factors
Common to processing body (P body) and stress granule
DFA_09898 (ddx3)
Spliceosome [BR:
dfa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
DFA_09898 (ddx3)
Chromosome and associated proteins [BR:
dfa03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
DFA_09898 (ddx3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF3592
Motif
Other DBs
NCBI-GeneID:
14867125
NCBI-ProteinID:
XP_004351795
UniProt:
F4Q8Q6
LinkDB
All DBs
Position
Unknown
AA seq
845 aa
AA seq
DB search
MAMDDKKFGWVLVGGFSFVIGTFFFLLFFFLYINPVLKVRNDYYEKECTITGTTILKFGS
GFQWKYYPLILTQYKDDNGATVDAQCSENFFQIHASVYGSGKAESYIEDFTVGETVKCWV
DNDLASHCFMNTKVPGGLTISNEGKNNQQQSSAPAGNSSSGPKLGGDKYVPPHLRREQQQ
RELDERERQTDNGGKGGRDGNNNSAPRGVEGGRTMTREDRPQEKDPRDFRDEAPRSTGGY
SREDNNGYRGGRGGSNYSPSYRGGGGGGGGWDRGSGGGYGGSPSYTRPSAFGNNNRGSGG
GYGKGRIDRYYEKWNQFKDSRVHKDMKRDEITLDEKTAEEIFKSKGNHGIDFDSVDDDDI
SIETSEHICAALNSFMDVDLGDVLFRNIQYAKYTRPTPVQKSALPIIMKERDLMACAQTG
SGKTAAFLFPIISSILLDGAPEPPAAYRPGVPRPVHPRALVLAPTRELAQQIYEESVKFS
YGSPVASVVVYGGAEISQQIAELDRGCDILVATTGRLVDLLSRGRVSLSQVKFLVLDEAD
RMLDMGFEPQIRQIIQDHDLPCNKDRQTLMFSATFPKPIQNLASDFLDNYIFLKVGVIGT
TQNITQRIEYVPDDEKNSTLLDFLETLTKSQALTLIFVETKRLCDSLTVFLNSRGYPTTC
IHGDLSQYERESALNSFRSGNTPFLVATDVASRGLHIPNVMHVINYDLPNDVHVYVHRIG
RTGRAGKKGNAISFFNEKNKPIAQELFQLMKKSNQEVPDWFDRSVNSFRPSKGGPPQKRY
NNNDNFGRHYNNNRGGDREDRYSGGGGGRSGGGGGGRGGNSDDYSGYQQQYMGGGGGGSY
GGSYN
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atggcaatggatgataagaaatttggttgggttttggttggaggcttttcatttgtgatt
ggaacgtttttctttttattattcttctttttgtatataaatccagttttaaaggttaga
aatgattattatgaaaaggaatgtactattactggaacaactatattaaaatttggttct
ggttttcaatggaaatattatccattaattttaactcaatataaagatgataatggagcg
acagttgatgcacaatgttcagagaatttctttcaaatacatgcatcagtttatggaagt
ggaaaagcagagagttatatagaagattttacagttggtgaaacagtcaaatgttgggtg
gacaatgatcttgcatcacactgttttatgaacactaaagtgcctggagggctaaccatc
tctaatgaaggtaagaacaaccagcaacaatcctcagccccagccggaaacagttcatcc
ggaccaaagcttggaggagacaagtacgttccaccacacctcagacgtgaacaacaacaa
cgtgaattagatgaacgtgaacgtcaaactgacaatggtggaaagggaggtcgtgatggt
aacaacaacagtgccccacgcggagtcgaaggtggtcgtaccatgacccgtgaagaccgt
ccccaagaaaaagacccacgtgactttagagacgaagccccccgttctactggtggttac
tctcgtgaagacaacaacggctaccgtggtggtcgtggtggttcaaactattccccatcc
taccgtggaggtggtggtggcggtggtggttgggaccgtggtagtggaggtggttatggt
ggctcgccatcctacacccgtccatctgcctttggtaacaacaaccgtggaagcggtggt
ggttacggtaaaggtagaatcgaccgttattatgaaaagtggaatcaattcaaggattcc
agagttcataaggatatgaagagagacgaaattactttagatgaaaagacagctgaagaa
attttcaagtcaaagggtaatcatggtattgattttgattcagttgatgatgatgacatt
tcaattgaaaccagtgaacacatttgtgctgctctcaactcttttatggatgttgatctc
ggagatgtcctcttccgtaacatccagtacgccaagtacactcgtccaacccccgtccaa
aagagcgctctcccaatcatcatgaaggaacgtgatttgatggcctgtgcccaaactggt
tccggaaagactgccgctttcctcttccccatcatctcatccatcctcttggacggtgcc
ccagaaccacccgctgcctaccgtccaggtgtcccacgtccagttcacccacgtgccctc
gtcctcgccccaactcgtgagctcgcccaacaaatctacgaagagtctgtcaagttctcg
tacggttcaccagttgcctcggttgtcgtctatggtggtgctgaaatctctcaacaaatc
gccgaactcgaccgtggttgtgatatcttggttgccactaccggtcgtctcgtcgatctc
ttgtcccgtggccgtgtctctttgagccaagtcaagttcctcgtactcgatgaggccgat
cgtatgttggatatgggtttcgaaccacaaatccgtcaaatcatccaagaccacgatctc
ccatgcaacaaggatcgtcaaacactcatgttttctgccaccttccccaagccaatccag
aacctcgcttctgatttcctcgacaactacatcttcctcaaggtcggcgttattggtacc
actcaaaacatcacccagcgtatcgagtatgtaccagacgatgaaaagaactcgaccctc
ctcgatttcctcgagaccttgaccaagtcccaagccctcaccctcatctttgtcgaaacc
aagcgtctctgcgacagtcttaccgtcttcctcaacagtcgtggttacccaaccacctgt
atccacggtgatttgtcccaatacgaacgtgagagtgccctcaactctttccgtagtgga
aacaccccattcttggtcgccactgatgtcgcctctaggggtttgcatattccaaacgtt
atgcacgtcatcaactatgatcttccaaacgatgtccacgtttacgtccatcgtatcggt
cgtactggtcgtgccggtaagaagggtaatgccatttccttctttaacgaaaagaacaag
ccaatcgcccaagaactcttccaattgatgaaaaagtccaaccaagaagtcccagattgg
ttcgatcgttccgtcaactctttccgtccaagcaagggtggtccaccccaaaagcgttac
aacaacaatgacaactttggcagacactacaacaacaaccgtggtggtgatcgtgaagac
cgttactctggtggtggtggtggccgttctggtggcggtggtggtggtcgtggtggaaac
agtgacgactactctggttaccaacaacaatacatgggtggtggcggcggtggcagctat
ggtggtagttacaactaa
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integrated database retrieval system
