Cavenderia fasciculata (cellular slime mold): DFA_11847
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Entry
DFA_11847 CDS
T02668
Symbol
ddx5
Name
(RefSeq) putative RNA helicase
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DFA_11847 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dfa03041
]
DFA_11847 (ddx5)
03009 Ribosome biogenesis [BR:
dfa03009
]
DFA_11847 (ddx5)
Enzymes [BR:
dfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DFA_11847 (ddx5)
Spliceosome [BR:
dfa03041
]
Complex A
U1 snRNP components
U1 related factors
DFA_11847 (ddx5)
Complex B
DFA_11847 (ddx5)
Ribosome biogenesis [BR:
dfa03009
]
Eukaryotic type
Pre-60S particles
Helicases
DFA_11847 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
P-loop_SecA
Mg_chelatase
Motif
Other DBs
NCBI-GeneID:
14866329
NCBI-ProteinID:
XP_004350792
UniProt:
F4QED7
LinkDB
All DBs
Position
Unknown
AA seq
803 aa
AA seq
DB search
MVHPNSNNKQQSQQQQDQNNKIKKRDFRKNRPPPTTNNDAKNKDNVVSFDDQGNQTTTKS
NNYNNNNNSYNNNNRNNSYNNNRGDDYSSSYENKGGYNNNRNNNNSYNNRNNNYNNKGAA
TGDRFNQNKYSNQFKDNNRNNNRFSKDTRSGTSTTPSTSTSTEQQERYIPKKVYEQKTGI
KVDTAVKSDKILDQINDEQVNKRVYGEDTEKVVELVPVDFTLDENKIVGGFSKFFLRGLV
ESEVAVTQDTEFVIEGTINDDKTFIGDSKIPIVGDGEHSVLAPEFNTYLTETNLYTPNYL
QQHLWPLALTGHDLMVISPPGSGKTIGFLLPLVPHIQHRMSQKTLVAKSPVALIVLPTRE
LAQQVYRSAIPLKRHFGISAVPIYGGVDPKPQIELLKNTPHILIATPGRLLDFIQQDIIS
LKGVTVAVLDEADKILSMGFMPQLVQIRSQIRPNAHIILSSATFSAKLEQNWLSSPSIKL
RIGKNELPDQSNIKQHLIYVKSSKMSQKFETRLKEIIKQGKKIIVFFNQTANLITISKLL
KKSNINHSSLFGKKTQHERDLVIGYFKNNASAKLLLCTDVVGRGIHIDDLDVVFNYQLPT
SLEQYCHRIGRVGRNGRQGCIAYSFVTVSNKTILPDLVQYLETNGNKVENDFKKNINLQL
GLNLDIPISKNQIEREEIAKKIQTEKNERLERRKQREETESEQKMDIDKEKKEKKDEKKD
EKMDDSSDSDSSSSSSSSSEEEEEDDSSDSSSSDDDSSSSDDDSSSSDDDSSSSEDESSS
SSSSDDSSSESSSSDDDDDSSSD
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atggtacatccaaatagtaacaataaacaacaatcacaacaacaacaagatcaaaataac
aagatcaaaaagagagattttagaaagaatcgtccgcctccaacaaccaacaatgacgcc
aagaataaagataatgtagttagttttgacgaccaaggaaatcaaacaacaacaaaatca
aacaactataacaataacaataacagctataacaataacaatagaaataatagttataat
aataatcgtggtgatgattattcaagttcatatgaaaacaaaggaggttataataacaat
agaaacaataataatagttataataatagaaacaacaattataacaacaagggtgctgct
acaggagatagatttaatcaaaacaaatattcaaatcaatttaaagataacaatagaaac
aataatagattctcgaaagataccagatctggtacctctactaccccatctacctctaca
tctactgaacaacaagaaagatatataccaaaaaaagtatatgaacaaaagacaggtatt
aaagtagacactgcagtaaagagtgacaagatattggatcaaatcaatgatgaacaagtc
aataagagagtgtatggagaagacactgaaaaggtggtagagttggttccagtcgatttc
acgttggatgagaacaagattgttggtggtttctcgaaattctttttgcgtggtcttgta
gagagcgaagttgccgtgactcaagacactgaatttgtgattgaaggtactattaatgac
gacaagacctttattggagacagcaagattcctattgtcggtgatggagaacactcggtt
ttggcaccagaattcaatacctatctcaccgagacgaacctctatacacccaattatctc
caacaacatctttggccattggcgctgaccggtcatgatttgatggtcatctcaccaccc
ggctctggcaagactattgggttcctcctcccactcgtcccacacattcaacatagaatg
tctcaaaagacgctggttgccaagagtccagtggctctgattgttttaccaacccgtgag
cttgctcaacaagtctatcgtagtgctatcccattgaaacgtcatttcggtatctctgca
gttcccatctatggtggtgtcgatccaaaaccacaaatcgagttgctcaaaaacactcct
cacattctcattgccacaccaggtcgtctattggatttcattcaacaagatattattagt
ctcaaaggtgtcactgttgccgtactcgatgaagccgacaaaatcctatctatgggtttc
atgccacaactcgttcaaatccgttcccaaattcgtcccaacgcccacattatcctttcc
tctgcaacctttagtgctaaattggaacaaaattggttatcctctccttcaattaaatta
agaattggtaaaaatgaattacctgatcaatcaaatattaaacaacatttaatttatgtt
aaatcatcgaaaatgtcacaaaagtttgaaactagattaaaagaaattattaaacaagga
aagaaaattattgtattttttaatcaaactgcaaatttaataacaattagtaaattatta
aaaaagagtaatattaatcatagtagtttatttggaaagaaaacacaacatgaacgtgat
ttggtgattggttatttcaagaataatgcaagtgccaagttgttgttgtgtaccgatgtg
gttggtagaggtattcatattgatgatttggatgttgtatttaattatcaattacctacc
agtcttgaacaatattgtcatagaattggtcgtgtcggtagaaatggaagacaaggatgt
attgcctattcctttgtcactgtttccaacaagactatccttccagacctagtacaatac
ttggaaaccaatggaaacaaggtagagaatgactttaaaaagaatatcaacctccaattg
ggtctcaacttggatattccaattagcaagaatcaaattgaacgtgaagaaattgctaaa
aagattcaaactgaaaagaatgaaagattagaaagaagaaaacaaagagaggaaactgaa
tctgaacaaaaaatggatatcgacaaggaaaaaaaggaaaaaaaggatgaaaagaaagat
gaaaagatggatgattcaagtgatagtgattcaagttcatcatcatcatcatcatcagaa
gaagaagaagaagatgactcaagtgattccagctcatctgatgatgattcaagctcatct
gatgatgattcaagctcatctgatgatgattcaagctcatctgaagatgaatcaagctct
agttcaagttccgatgactctagttcagaatcaagttcatcagatgatgatgatgattca
agttcagactaa
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